Experiment: R2A with Fusaric 120 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_00860 and PS417_00865 overlap by 4 nucleotides PS417_00865 and PS417_00870 overlap by 4 nucleotides PS417_00870 and PS417_00875 are separated by 527 nucleotides
PS417_00860: PS417_00860 - hypothetical protein, at 191,763 to 194,669
_00860
PS417_00865: PS417_00865 - hypothetical protein, at 194,666 to 194,938
_00865
PS417_00870: PS417_00870 - hypothetical protein, at 194,935 to 195,219
_00870
PS417_00875: PS417_00875 - hypothetical protein, at 195,747 to 196,052
_00875
Position (kb) 194
195 Strain fitness (log2 ratio) -1
0
1
2 at 194.207 kb on - strand, within PS417_00860 at 194.536 kb on + strand at 194.536 kb on + strand at 194.537 kb on - strand at 194.537 kb on - strand at 194.739 kb on + strand, within PS417_00865 at 194.740 kb on - strand, within PS417_00865 at 194.740 kb on - strand, within PS417_00865 at 194.741 kb on + strand, within PS417_00865 at 194.741 kb on + strand, within PS417_00865 at 194.742 kb on - strand, within PS417_00865 at 194.742 kb on - strand, within PS417_00865 at 194.742 kb on - strand, within PS417_00865 at 195.121 kb on + strand, within PS417_00870 at 195.121 kb on + strand, within PS417_00870 at 195.122 kb on - strand, within PS417_00870 at 195.172 kb on - strand, within PS417_00870 at 195.272 kb on - strand at 195.309 kb on + strand at 195.309 kb on + strand at 195.309 kb on + strand at 195.309 kb on + strand at 195.310 kb on - strand at 195.310 kb on - strand at 195.374 kb on + strand at 195.374 kb on + strand at 195.374 kb on + strand at 195.374 kb on + strand at 195.374 kb on + strand at 195.374 kb on + strand at 195.374 kb on + strand at 195.374 kb on + strand at 195.374 kb on + strand at 195.375 kb on - strand at 195.375 kb on - strand at 195.375 kb on - strand at 195.429 kb on + strand at 195.430 kb on - strand at 195.430 kb on - strand at 195.572 kb on + strand at 195.573 kb on - strand at 195.702 kb on - strand at 195.708 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Fusaric 120 ug/mL remove 194,207 - PS417_00860 0.84 +0.2 194,536 + +0.2 194,536 + -0.7 194,537 - +0.4 194,537 - -0.5 194,739 + PS417_00865 0.27 -0.2 194,740 - PS417_00865 0.27 +1.3 194,740 - PS417_00865 0.27 +0.1 194,741 + PS417_00865 0.27 +0.5 194,741 + PS417_00865 0.27 -0.0 194,742 - PS417_00865 0.28 +0.7 194,742 - PS417_00865 0.28 +0.8 194,742 - PS417_00865 0.28 +2.0 195,121 + PS417_00870 0.65 -0.0 195,121 + PS417_00870 0.65 +0.2 195,122 - PS417_00870 0.66 -0.3 195,172 - PS417_00870 0.83 +0.8 195,272 - +0.9 195,309 + -0.2 195,309 + +0.1 195,309 + +0.1 195,309 + -0.7 195,310 - +0.3 195,310 - +0.1 195,374 + +0.3 195,374 + -0.3 195,374 + -0.7 195,374 + +2.6 195,374 + +0.1 195,374 + +1.5 195,374 + +0.3 195,374 + -0.1 195,374 + -0.2 195,375 - -0.4 195,375 - +0.5 195,375 - +0.2 195,429 + +1.0 195,430 - -0.2 195,430 - -0.1 195,572 + +0.8 195,573 - +0.1 195,702 - +1.2 195,708 - +1.4
Or see this region's nucleotide sequence