Experiment: Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Cocuture=C58C1OD2.0
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu6141 and Atu6142 overlap by 4 nucleotides Atu6142 and Atu6143 overlap by 8 nucleotides Atu6143 and Atu6144 are separated by 15 nucleotides Atu6144 and Atu6145 overlap by 8 nucleotides
Atu6141: Atu6141 - ABC transporter, nucleotide binding/ATPase protein (agrocinopine), at 160,859 to 161,878
Atu6141
Atu6142: Atu6142 - ABC transporter, membrane spanning protein (agrocinopine), at 161,875 to 162,801
Atu6142
Atu6143: Atu6143 - ABC transporter, membrane spanning protein (agrocinopine), at 162,794 to 163,654
Atu6143
Atu6144: Atu6144 - agrocinopine phosphodiesterase, at 163,670 to 164,470
Atu6144
Atu6145: Atu6145 - arabinose phosphate phosphatase, at 164,463 to 165,281
Atu6145
Position (kb) 162
163
164 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 161.808 kb on - strand at 161.808 kb on - strand at 161.810 kb on + strand at 161.847 kb on + strand at 162.029 kb on - strand, within Atu6142 at 162.029 kb on - strand, within Atu6142 at 162.031 kb on + strand, within Atu6142 at 162.032 kb on + strand, within Atu6142 at 162.037 kb on + strand, within Atu6142 at 162.037 kb on + strand, within Atu6142 at 162.039 kb on - strand, within Atu6142 at 162.045 kb on - strand, within Atu6142 at 162.045 kb on - strand, within Atu6142 at 162.045 kb on - strand, within Atu6142 at 162.045 kb on - strand, within Atu6142 at 162.045 kb on - strand, within Atu6142 at 162.045 kb on - strand, within Atu6142 at 162.050 kb on - strand, within Atu6142 at 162.050 kb on - strand, within Atu6142 at 162.053 kb on + strand, within Atu6142 at 162.061 kb on - strand, within Atu6142 at 162.063 kb on + strand, within Atu6142 at 162.071 kb on - strand, within Atu6142 at 162.122 kb on + strand, within Atu6142 at 162.138 kb on - strand, within Atu6142 at 162.156 kb on + strand, within Atu6142 at 162.270 kb on + strand, within Atu6142 at 162.287 kb on + strand, within Atu6142 at 162.288 kb on - strand, within Atu6142 at 162.457 kb on - strand, within Atu6142 at 162.459 kb on + strand, within Atu6142 at 162.459 kb on + strand, within Atu6142 at 162.467 kb on - strand, within Atu6142 at 162.477 kb on + strand, within Atu6142 at 162.477 kb on + strand, within Atu6142 at 162.480 kb on - strand, within Atu6142 at 162.613 kb on + strand, within Atu6142 at 162.617 kb on - strand, within Atu6142 at 162.630 kb on + strand, within Atu6142 at 162.640 kb on + strand, within Atu6142 at 162.711 kb on - strand at 162.726 kb on - strand at 162.771 kb on - strand at 162.851 kb on + strand at 162.861 kb on + strand at 162.861 kb on + strand at 162.869 kb on - strand at 162.921 kb on + strand, within Atu6143 at 162.921 kb on + strand, within Atu6143 at 162.921 kb on + strand, within Atu6143 at 162.922 kb on - strand, within Atu6143 at 162.946 kb on + strand, within Atu6143 at 162.947 kb on - strand, within Atu6143 at 162.947 kb on - strand, within Atu6143 at 162.949 kb on - strand, within Atu6143 at 162.953 kb on + strand, within Atu6143 at 162.953 kb on + strand, within Atu6143 at 162.961 kb on - strand, within Atu6143 at 163.002 kb on - strand, within Atu6143 at 163.007 kb on - strand, within Atu6143 at 163.009 kb on + strand, within Atu6143 at 163.041 kb on - strand, within Atu6143 at 163.054 kb on - strand, within Atu6143 at 163.054 kb on - strand, within Atu6143 at 163.079 kb on + strand, within Atu6143 at 163.164 kb on + strand, within Atu6143 at 163.197 kb on - strand, within Atu6143 at 163.219 kb on - strand, within Atu6143 at 163.316 kb on + strand, within Atu6143 at 163.324 kb on + strand, within Atu6143 at 163.333 kb on - strand, within Atu6143 at 163.353 kb on - strand, within Atu6143 at 163.388 kb on + strand, within Atu6143 at 163.396 kb on - strand, within Atu6143 at 163.396 kb on - strand, within Atu6143 at 163.458 kb on - strand, within Atu6143 at 163.469 kb on - strand, within Atu6143 at 163.503 kb on + strand, within Atu6143 at 163.503 kb on + strand, within Atu6143 at 163.508 kb on + strand, within Atu6143 at 163.562 kb on + strand, within Atu6143 at 163.691 kb on - strand at 163.856 kb on + strand, within Atu6144 at 163.857 kb on - strand, within Atu6144 at 163.864 kb on - strand, within Atu6144 at 163.876 kb on + strand, within Atu6144 at 163.905 kb on + strand, within Atu6144 at 163.924 kb on - strand, within Atu6144 at 163.942 kb on - strand, within Atu6144 at 163.952 kb on - strand, within Atu6144 at 163.975 kb on + strand, within Atu6144 at 163.975 kb on + strand, within Atu6144 at 163.975 kb on + strand, within Atu6144 at 163.975 kb on + strand, within Atu6144 at 163.975 kb on + strand, within Atu6144 at 163.983 kb on - strand, within Atu6144 at 163.983 kb on - strand, within Atu6144 at 163.983 kb on - strand, within Atu6144 at 163.998 kb on + strand, within Atu6144 at 164.087 kb on + strand, within Atu6144 at 164.090 kb on - strand, within Atu6144 at 164.095 kb on - strand, within Atu6144 at 164.097 kb on + strand, within Atu6144 at 164.097 kb on + strand, within Atu6144 at 164.097 kb on + strand, within Atu6144 at 164.105 kb on - strand, within Atu6144 at 164.105 kb on - strand, within Atu6144 at 164.105 kb on - strand, within Atu6144 at 164.105 kb on - strand, within Atu6144 at 164.180 kb on + strand, within Atu6144 at 164.271 kb on + strand, within Atu6144 at 164.296 kb on + strand, within Atu6144 at 164.353 kb on + strand, within Atu6144 at 164.361 kb on - strand, within Atu6144 at 164.445 kb on + strand at 164.447 kb on + strand at 164.469 kb on + strand at 164.477 kb on - strand at 164.477 kb on - strand at 164.550 kb on - strand, within Atu6145 at 164.550 kb on - strand, within Atu6145 at 164.569 kb on + strand, within Atu6145 at 164.576 kb on - strand, within Atu6145 at 164.596 kb on - strand, within Atu6145 at 164.596 kb on - strand, within Atu6145
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Cocuture=C58C1OD2.0 remove 161,808 - -0.6 161,808 - -1.2 161,810 + +1.1 161,847 + -1.4 162,029 - Atu6142 0.17 -1.4 162,029 - Atu6142 0.17 -0.5 162,031 + Atu6142 0.17 -1.5 162,032 + Atu6142 0.17 -1.8 162,037 + Atu6142 0.17 -1.0 162,037 + Atu6142 0.17 -1.6 162,039 - Atu6142 0.18 -1.5 162,045 - Atu6142 0.18 -1.5 162,045 - Atu6142 0.18 -0.8 162,045 - Atu6142 0.18 -1.3 162,045 - Atu6142 0.18 -1.5 162,045 - Atu6142 0.18 -0.6 162,045 - Atu6142 0.18 -1.5 162,050 - Atu6142 0.19 -1.8 162,050 - Atu6142 0.19 -1.9 162,053 + Atu6142 0.19 -2.1 162,061 - Atu6142 0.20 -1.3 162,063 + Atu6142 0.20 -1.7 162,071 - Atu6142 0.21 -0.1 162,122 + Atu6142 0.27 -0.7 162,138 - Atu6142 0.28 -1.3 162,156 + Atu6142 0.30 -1.3 162,270 + Atu6142 0.43 -0.7 162,287 + Atu6142 0.44 -1.2 162,288 - Atu6142 0.45 +0.1 162,457 - Atu6142 0.63 -0.9 162,459 + Atu6142 0.63 -1.6 162,459 + Atu6142 0.63 -1.9 162,467 - Atu6142 0.64 -2.6 162,477 + Atu6142 0.65 -1.6 162,477 + Atu6142 0.65 -1.3 162,480 - Atu6142 0.65 -1.2 162,613 + Atu6142 0.80 -1.0 162,617 - Atu6142 0.80 -3.4 162,630 + Atu6142 0.81 -1.0 162,640 + Atu6142 0.83 -1.1 162,711 - -1.9 162,726 - -2.7 162,771 - -1.6 162,851 + -0.6 162,861 + -2.0 162,861 + -1.5 162,869 - -1.5 162,921 + Atu6143 0.15 -1.6 162,921 + Atu6143 0.15 -0.4 162,921 + Atu6143 0.15 -2.0 162,922 - Atu6143 0.15 -1.1 162,946 + Atu6143 0.18 -1.4 162,947 - Atu6143 0.18 -1.4 162,947 - Atu6143 0.18 -2.2 162,949 - Atu6143 0.18 -0.0 162,953 + Atu6143 0.18 -1.5 162,953 + Atu6143 0.18 -1.2 162,961 - Atu6143 0.19 -0.6 163,002 - Atu6143 0.24 -2.2 163,007 - Atu6143 0.25 -1.9 163,009 + Atu6143 0.25 -1.6 163,041 - Atu6143 0.29 -1.4 163,054 - Atu6143 0.30 -1.9 163,054 - Atu6143 0.30 -2.0 163,079 + Atu6143 0.33 -0.8 163,164 + Atu6143 0.43 -0.0 163,197 - Atu6143 0.47 -1.6 163,219 - Atu6143 0.49 -1.8 163,316 + Atu6143 0.61 -1.1 163,324 + Atu6143 0.62 -1.5 163,333 - Atu6143 0.63 -1.7 163,353 - Atu6143 0.65 -0.0 163,388 + Atu6143 0.69 -0.5 163,396 - Atu6143 0.70 -2.5 163,396 - Atu6143 0.70 +0.5 163,458 - Atu6143 0.77 -0.9 163,469 - Atu6143 0.78 -0.9 163,503 + Atu6143 0.82 -1.4 163,503 + Atu6143 0.82 -0.6 163,508 + Atu6143 0.83 -1.7 163,562 + Atu6143 0.89 -1.5 163,691 - -2.8 163,856 + Atu6144 0.23 -2.2 163,857 - Atu6144 0.23 -2.7 163,864 - Atu6144 0.24 -2.4 163,876 + Atu6144 0.26 -1.9 163,905 + Atu6144 0.29 -2.7 163,924 - Atu6144 0.32 -3.2 163,942 - Atu6144 0.34 -1.9 163,952 - Atu6144 0.35 -1.3 163,975 + Atu6144 0.38 -2.5 163,975 + Atu6144 0.38 -2.0 163,975 + Atu6144 0.38 -2.2 163,975 + Atu6144 0.38 -3.1 163,975 + Atu6144 0.38 -3.6 163,983 - Atu6144 0.39 -1.5 163,983 - Atu6144 0.39 -3.0 163,983 - Atu6144 0.39 -3.4 163,998 + Atu6144 0.41 -2.7 164,087 + Atu6144 0.52 -4.3 164,090 - Atu6144 0.52 -2.9 164,095 - Atu6144 0.53 -0.3 164,097 + Atu6144 0.53 -2.5 164,097 + Atu6144 0.53 -2.5 164,097 + Atu6144 0.53 -3.6 164,105 - Atu6144 0.54 -2.5 164,105 - Atu6144 0.54 -1.9 164,105 - Atu6144 0.54 -2.5 164,105 - Atu6144 0.54 -1.5 164,180 + Atu6144 0.64 -3.2 164,271 + Atu6144 0.75 -1.4 164,296 + Atu6144 0.78 -3.3 164,353 + Atu6144 0.85 -1.2 164,361 - Atu6144 0.86 -2.1 164,445 + -1.0 164,447 + -0.2 164,469 + -1.1 164,477 - -0.5 164,477 - -1.8 164,550 - Atu6145 0.11 -1.4 164,550 - Atu6145 0.11 -1.2 164,569 + Atu6145 0.13 -1.2 164,576 - Atu6145 0.14 -1.0 164,596 - Atu6145 0.16 -0.7 164,596 - Atu6145 0.16 -1.8
Or see this region's nucleotide sequence