Strain Fitness in Agrobacterium fabrum C58 around Atu6142

Experiment: Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Cocuture=C58C1OD2.0

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Cocuture=C58C1OD2.0
160,882	-				-1.0
160,882	-				-1.2
160,897	+				-1.0
160,900	-				-0.8
160,941	+				-1.8
160,986	+		Atu6141	0.12	-1.2
161,013	-		Atu6141	0.15	-1.3
161,029	+		Atu6141	0.17	-1.5
161,029	+		Atu6141	0.17	-1.2
161,032	-		Atu6141	0.17	-1.3
161,037	-		Atu6141	0.17	-1.0
161,044	-		Atu6141	0.18	-1.6
161,053	-		Atu6141	0.19	-1.2
161,080	-		Atu6141	0.22	-2.5
161,108	+		Atu6141	0.24	-0.9
161,116	-		Atu6141	0.25	-2.1
161,226	+		Atu6141	0.36	-1.6
161,236	-		Atu6141	0.37	-0.4
161,277	+		Atu6141	0.41	+0.0
161,315	-		Atu6141	0.45	-1.5
161,323	-		Atu6141	0.45	-1.1
161,406	-		Atu6141	0.54	+0.4
161,501	-		Atu6141	0.63	-1.0
161,582	+		Atu6141	0.71	-1.4
161,603	+		Atu6141	0.73	-1.6
161,603	+		Atu6141	0.73	-1.3
161,603	+		Atu6141	0.73	-1.7
161,603	+		Atu6141	0.73	-0.5
161,603	+		Atu6141	0.73	-0.7
161,603	+		Atu6141	0.73	-1.0
161,611	-		Atu6141	0.74	-1.9
161,611	-		Atu6141	0.74	-1.0
161,611	-		Atu6141	0.74	-3.0
161,611	-		Atu6141	0.74	-0.6
161,618	+		Atu6141	0.74	-1.7
161,628	-		Atu6141	0.75	-0.0
161,632	-		Atu6141	0.76	-1.9
161,637	+		Atu6141	0.76	-1.7
161,649	-		Atu6141	0.77	-1.9
161,658	+		Atu6141	0.78	-2.5
161,698	+		Atu6141	0.82	-1.0
161,706	-		Atu6141	0.83	-2.2
161,706	-		Atu6141	0.83	-1.2
161,808	-				-0.6
161,808	-				-1.2
161,810	+				+1.1
161,847	+				-1.4
162,029	-		Atu6142	0.17	-1.4
162,029	-		Atu6142	0.17	-0.5
162,031	+		Atu6142	0.17	-1.5
162,032	+		Atu6142	0.17	-1.8
162,037	+		Atu6142	0.17	-1.0
162,037	+		Atu6142	0.17	-1.6
162,039	-		Atu6142	0.18	-1.5
162,045	-		Atu6142	0.18	-1.5
162,045	-		Atu6142	0.18	-0.8
162,045	-		Atu6142	0.18	-1.3
162,045	-		Atu6142	0.18	-1.5
162,045	-		Atu6142	0.18	-0.6
162,045	-		Atu6142	0.18	-1.5
162,050	-		Atu6142	0.19	-1.8
162,050	-		Atu6142	0.19	-1.9
162,053	+		Atu6142	0.19	-2.1
162,061	-		Atu6142	0.20	-1.3
162,063	+		Atu6142	0.20	-1.7
162,071	-		Atu6142	0.21	-0.1
162,122	+		Atu6142	0.27	-0.7
162,138	-		Atu6142	0.28	-1.3
162,156	+		Atu6142	0.30	-1.3
162,270	+		Atu6142	0.43	-0.7
162,287	+		Atu6142	0.44	-1.2
162,288	-		Atu6142	0.45	+0.1
162,457	-		Atu6142	0.63	-0.9
162,459	+		Atu6142	0.63	-1.6
162,459	+		Atu6142	0.63	-1.9
162,467	-		Atu6142	0.64	-2.6
162,477	+		Atu6142	0.65	-1.6
162,477	+		Atu6142	0.65	-1.3
162,480	-		Atu6142	0.65	-1.2
162,613	+		Atu6142	0.80	-1.0
162,617	-		Atu6142	0.80	-3.4
162,630	+		Atu6142	0.81	-1.0
162,640	+		Atu6142	0.83	-1.1
162,711	-				-1.9
162,726	-				-2.7
162,771	-				-1.6
162,851	+				-0.6
162,861	+				-2.0
162,861	+				-1.5
162,869	-				-1.5
162,921	+		Atu6143	0.15	-1.6
162,921	+		Atu6143	0.15	-0.4
162,921	+		Atu6143	0.15	-2.0
162,922	-		Atu6143	0.15	-1.1
162,946	+		Atu6143	0.18	-1.4
162,947	-		Atu6143	0.18	-1.4
162,947	-		Atu6143	0.18	-2.2
162,949	-		Atu6143	0.18	-0.0
162,953	+		Atu6143	0.18	-1.5
162,953	+		Atu6143	0.18	-1.2
162,961	-		Atu6143	0.19	-0.6
163,002	-		Atu6143	0.24	-2.2
163,007	-		Atu6143	0.25	-1.9
163,009	+		Atu6143	0.25	-1.6
163,041	-		Atu6143	0.29	-1.4
163,054	-		Atu6143	0.30	-1.9
163,054	-		Atu6143	0.30	-2.0
163,079	+		Atu6143	0.33	-0.8
163,164	+		Atu6143	0.43	-0.0
163,197	-		Atu6143	0.47	-1.6
163,219	-		Atu6143	0.49	-1.8
163,316	+		Atu6143	0.61	-1.1
163,324	+		Atu6143	0.62	-1.5
163,333	-		Atu6143	0.63	-1.7
163,353	-		Atu6143	0.65	-0.0
163,388	+		Atu6143	0.69	-0.5
163,396	-		Atu6143	0.70	-2.5
163,396	-		Atu6143	0.70	+0.5
163,458	-		Atu6143	0.77	-0.9
163,469	-		Atu6143	0.78	-0.9
163,503	+		Atu6143	0.82	-1.4
163,503	+		Atu6143	0.82	-0.6
163,508	+		Atu6143	0.83	-1.7
163,562	+		Atu6143	0.89	-1.5
163,691	-				-2.8