Strain Fitness in Agrobacterium fabrum C58 around Atu6029

Experiment: Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Cocuture=C58C1OD2.0

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Cocuture=C58C1OD2.0
39,380	-		Atu6028	0.13	-0.5
39,392	+		Atu6028	0.14	-4.1
39,392	+		Atu6028	0.14	-1.7
39,400	-		Atu6028	0.15	-0.9
39,448	-		Atu6028	0.22	-1.7
39,481	-		Atu6028	0.26	-1.0
39,542	-		Atu6028	0.34	-1.5
39,595	+		Atu6028	0.41	-0.8
39,595	+		Atu6028	0.41	-1.5
39,603	-		Atu6028	0.42	-0.9
39,612	-		Atu6028	0.43	-0.5
39,635	-		Atu6028	0.46	-1.4
39,665	+		Atu6028	0.50	-1.1
39,672	+		Atu6028	0.51	-1.2
39,734	-		Atu6028	0.59	-1.4
39,742	+		Atu6028	0.60	-1.7
39,742	+		Atu6028	0.60	+1.2
39,864	+		Atu6028	0.75	-0.7
39,892	+		Atu6028	0.79	-1.2
39,892	+		Atu6028	0.79	-1.2
39,902	+		Atu6028	0.80	-2.2
39,912	-		Atu6028	0.82	-0.6
39,914	+		Atu6028	0.82	-2.6
40,037	+				-1.8
40,039	+				-1.3
40,096	+				-0.5
40,118	-				-1.4
40,139	-				-0.0
40,184	-				-0.5
40,184	-				-0.7
40,184	-				-0.5
40,334	+				-0.8
40,334	+				-1.5
40,334	+				-1.3
40,359	+				-0.6
40,395	-				-2.5
40,395	-				-1.9
40,397	+				+0.1
40,415	+				-0.8
40,490	+		Atu6029	0.15	-1.2
40,510	-		Atu6029	0.17	-0.8
40,598	+		Atu6029	0.28	-1.0
40,598	+		Atu6029	0.28	-0.6
40,598	+		Atu6029	0.28	-1.2
40,600	+		Atu6029	0.28	-1.6
40,622	-		Atu6029	0.31	-0.9
40,682	+		Atu6029	0.38	-1.9
40,728	-		Atu6029	0.43	-1.7
40,760	+		Atu6029	0.47	-0.8
40,760	+		Atu6029	0.47	-1.3
40,765	+		Atu6029	0.47	-0.6
40,773	-		Atu6029	0.48	-1.3
40,773	-		Atu6029	0.48	-0.8
40,783	+		Atu6029	0.50	-1.9
40,827	-		Atu6029	0.55	-1.0
40,903	+		Atu6029	0.64	+0.4
40,911	-		Atu6029	0.65	-1.0
40,929	+		Atu6029	0.67	-1.6
40,929	+		Atu6029	0.67	-0.1
40,929	+		Atu6029	0.67	-1.6
40,932	+		Atu6029	0.67	-1.4
40,938	-		Atu6029	0.68	-1.1
40,947	-		Atu6029	0.69	-0.7
40,965	+		Atu6029	0.71	-0.5
40,985	+		Atu6029	0.73	-1.2
40,998	+		Atu6029	0.75	-3.3
41,006	-		Atu6029	0.76	-2.0
41,008	+		Atu6029	0.76	-1.3
41,054	-		Atu6029	0.82	-2.6
41,054	-		Atu6029	0.82	-1.8
41,054	-		Atu6029	0.82	+0.5
41,054	-		Atu6029	0.82	+0.5
41,054	-		Atu6029	0.82	-0.9
41,070	+		Atu6029	0.83	+2.5
41,080	+		Atu6029	0.85	-1.4
41,080	+		Atu6029	0.85	-0.8
41,080	+		Atu6029	0.85	-1.1
41,088	-		Atu6029	0.86	-1.6
41,088	-		Atu6029	0.86	-1.3
41,179	-				+1.3
41,195	+				+0.4
41,195	-				-2.2
41,259	-		Atu6030	0.12	+0.1
41,259	-		Atu6030	0.12	+0.4
41,275	+		Atu6030	0.17	-0.4
41,292	-		Atu6030	0.22	-0.1
41,325	-		Atu6030	0.31	+1.1
41,351	-		Atu6030	0.38	+1.1
41,387	-		Atu6030	0.48	+0.3
41,487	+		Atu6030	0.76	+0.0
41,502	+		Atu6030	0.80	-0.3
41,502	+		Atu6030	0.80	+0.0
41,521	+		Atu6030	0.85	-0.4
41,529	-		Atu6030	0.88	+0.2
41,533	-		Atu6030	0.89	-0.2
41,534	-		Atu6030	0.89	+0.9
41,540	+				-0.0
41,636	+				+0.4
41,649	+				+0.8
41,741	-		Atu6031	0.13	+0.5
41,766	+		Atu6031	0.15	+0.0
41,770	+		Atu6031	0.15	+0.5
41,814	-		Atu6031	0.19	+0.1
41,862	+		Atu6031	0.22	-0.2
41,862	+		Atu6031	0.22	-1.1
41,870	-		Atu6031	0.23	-0.5
41,870	-		Atu6031	0.23	+0.0
41,905	-		Atu6031	0.25	-0.1
41,924	+		Atu6031	0.27	-0.3
41,962	-		Atu6031	0.30	+0.2
41,972	-		Atu6031	0.31	+0.1
42,003	-		Atu6031	0.33	-0.5
42,003	-		Atu6031	0.33	+0.2
42,046	+		Atu6031	0.36	+0.2
42,046	-		Atu6031	0.36	+0.9
42,064	-		Atu6031	0.38	-0.6
42,071	-		Atu6031	0.38	+0.5
42,101	+		Atu6031	0.40	+0.9
42,115	+		Atu6031	0.41	-0.1
42,151	+		Atu6031	0.44	-0.4
42,159	-		Atu6031	0.45	+0.5
42,187	+		Atu6031	0.47	+0.3
42,195	-		Atu6031	0.47	-0.0