Experiment: Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Cocuture=C58C1OD2.0
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu6026 and Atu6027 are separated by 73 nucleotides Atu6027 and Atu6028 are separated by 64 nucleotides Atu6028 and Atu6029 are separated by 307 nucleotides
Atu6026: Atu6026 - ABC transporter, membrane spanning protein (nopaline), at 37,581 to 38,291
Atu6026
Atu6027: Atu6027 - ABC transporter, substrate binding protein (nopaline), at 38,365 to 39,216
Atu6027
Atu6028: Atu6028 - ABC transporter, nucleotide binding/ATPase protein (nopaline), at 39,281 to 40,054
Atu6028
Atu6029: Atu6029 - transcriptional regulator, LysR family for nopaline metabolism, at 40,362 to 41,210
Atu6029
Position (kb) 39
40
41 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 38.289 kb on - strand at 38.293 kb on + strand at 38.299 kb on + strand at 38.301 kb on - strand at 38.370 kb on + strand at 38.370 kb on + strand at 38.370 kb on + strand at 38.410 kb on + strand at 38.415 kb on + strand at 38.418 kb on - strand at 38.418 kb on - strand at 38.423 kb on - strand at 38.462 kb on + strand, within Atu6027 at 38.470 kb on - strand, within Atu6027 at 38.498 kb on + strand, within Atu6027 at 38.564 kb on + strand, within Atu6027 at 38.604 kb on + strand, within Atu6027 at 38.612 kb on - strand, within Atu6027 at 38.612 kb on - strand, within Atu6027 at 38.656 kb on + strand, within Atu6027 at 38.671 kb on - strand, within Atu6027 at 38.722 kb on - strand, within Atu6027 at 38.733 kb on + strand, within Atu6027 at 38.741 kb on - strand, within Atu6027 at 38.782 kb on - strand, within Atu6027 at 38.853 kb on - strand, within Atu6027 at 38.878 kb on - strand, within Atu6027 at 38.984 kb on + strand, within Atu6027 at 39.016 kb on + strand, within Atu6027 at 39.104 kb on - strand, within Atu6027 at 39.137 kb on + strand at 39.148 kb on + strand at 39.265 kb on - strand at 39.286 kb on - strand at 39.296 kb on - strand at 39.304 kb on + strand at 39.380 kb on - strand, within Atu6028 at 39.392 kb on + strand, within Atu6028 at 39.392 kb on + strand, within Atu6028 at 39.400 kb on - strand, within Atu6028 at 39.448 kb on - strand, within Atu6028 at 39.481 kb on - strand, within Atu6028 at 39.542 kb on - strand, within Atu6028 at 39.595 kb on + strand, within Atu6028 at 39.595 kb on + strand, within Atu6028 at 39.603 kb on - strand, within Atu6028 at 39.612 kb on - strand, within Atu6028 at 39.635 kb on - strand, within Atu6028 at 39.665 kb on + strand, within Atu6028 at 39.672 kb on + strand, within Atu6028 at 39.734 kb on - strand, within Atu6028 at 39.742 kb on + strand, within Atu6028 at 39.742 kb on + strand, within Atu6028 at 39.864 kb on + strand, within Atu6028 at 39.892 kb on + strand, within Atu6028 at 39.892 kb on + strand, within Atu6028 at 39.902 kb on + strand, within Atu6028 at 39.912 kb on - strand, within Atu6028 at 39.914 kb on + strand, within Atu6028 at 40.037 kb on + strand at 40.039 kb on + strand at 40.096 kb on + strand at 40.118 kb on - strand at 40.139 kb on - strand at 40.184 kb on - strand at 40.184 kb on - strand at 40.184 kb on - strand at 40.334 kb on + strand at 40.334 kb on + strand at 40.334 kb on + strand at 40.359 kb on + strand at 40.395 kb on - strand at 40.395 kb on - strand at 40.397 kb on + strand at 40.415 kb on + strand at 40.490 kb on + strand, within Atu6029 at 40.510 kb on - strand, within Atu6029 at 40.598 kb on + strand, within Atu6029 at 40.598 kb on + strand, within Atu6029 at 40.598 kb on + strand, within Atu6029 at 40.600 kb on + strand, within Atu6029 at 40.622 kb on - strand, within Atu6029 at 40.682 kb on + strand, within Atu6029 at 40.728 kb on - strand, within Atu6029 at 40.760 kb on + strand, within Atu6029 at 40.760 kb on + strand, within Atu6029 at 40.765 kb on + strand, within Atu6029 at 40.773 kb on - strand, within Atu6029 at 40.773 kb on - strand, within Atu6029 at 40.783 kb on + strand, within Atu6029 at 40.827 kb on - strand, within Atu6029 at 40.903 kb on + strand, within Atu6029 at 40.911 kb on - strand, within Atu6029 at 40.929 kb on + strand, within Atu6029 at 40.929 kb on + strand, within Atu6029 at 40.929 kb on + strand, within Atu6029 at 40.932 kb on + strand, within Atu6029 at 40.938 kb on - strand, within Atu6029 at 40.947 kb on - strand, within Atu6029 at 40.965 kb on + strand, within Atu6029 at 40.985 kb on + strand, within Atu6029 at 40.998 kb on + strand, within Atu6029 at 41.006 kb on - strand, within Atu6029 at 41.008 kb on + strand, within Atu6029 at 41.054 kb on - strand, within Atu6029 at 41.054 kb on - strand, within Atu6029 at 41.054 kb on - strand, within Atu6029 at 41.054 kb on - strand, within Atu6029 at 41.054 kb on - strand, within Atu6029
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Cocuture=C58C1OD2.0 remove 38,289 - -2.9 38,293 + -1.4 38,299 + -1.0 38,301 - -1.1 38,370 + -0.2 38,370 + +1.0 38,370 + -0.0 38,410 + -0.2 38,415 + -1.6 38,418 - -1.2 38,418 - +0.9 38,423 - -1.3 38,462 + Atu6027 0.11 -1.4 38,470 - Atu6027 0.12 -1.7 38,498 + Atu6027 0.16 -1.5 38,564 + Atu6027 0.23 -1.2 38,604 + Atu6027 0.28 -2.1 38,612 - Atu6027 0.29 -0.2 38,612 - Atu6027 0.29 -0.8 38,656 + Atu6027 0.34 -0.9 38,671 - Atu6027 0.36 -1.9 38,722 - Atu6027 0.42 -1.0 38,733 + Atu6027 0.43 -1.2 38,741 - Atu6027 0.44 +0.1 38,782 - Atu6027 0.49 +0.5 38,853 - Atu6027 0.57 -0.9 38,878 - Atu6027 0.60 -1.6 38,984 + Atu6027 0.73 -2.6 39,016 + Atu6027 0.76 -2.0 39,104 - Atu6027 0.87 -1.1 39,137 + -0.2 39,148 + -2.4 39,265 - -0.4 39,286 - -0.5 39,296 - +0.1 39,304 + -1.0 39,380 - Atu6028 0.13 -0.5 39,392 + Atu6028 0.14 -4.1 39,392 + Atu6028 0.14 -1.7 39,400 - Atu6028 0.15 -0.9 39,448 - Atu6028 0.22 -1.7 39,481 - Atu6028 0.26 -1.0 39,542 - Atu6028 0.34 -1.5 39,595 + Atu6028 0.41 -0.8 39,595 + Atu6028 0.41 -1.5 39,603 - Atu6028 0.42 -0.9 39,612 - Atu6028 0.43 -0.5 39,635 - Atu6028 0.46 -1.4 39,665 + Atu6028 0.50 -1.1 39,672 + Atu6028 0.51 -1.2 39,734 - Atu6028 0.59 -1.4 39,742 + Atu6028 0.60 -1.7 39,742 + Atu6028 0.60 +1.2 39,864 + Atu6028 0.75 -0.7 39,892 + Atu6028 0.79 -1.2 39,892 + Atu6028 0.79 -1.2 39,902 + Atu6028 0.80 -2.2 39,912 - Atu6028 0.82 -0.6 39,914 + Atu6028 0.82 -2.6 40,037 + -1.8 40,039 + -1.3 40,096 + -0.5 40,118 - -1.4 40,139 - -0.0 40,184 - -0.5 40,184 - -0.7 40,184 - -0.5 40,334 + -0.8 40,334 + -1.5 40,334 + -1.3 40,359 + -0.6 40,395 - -2.5 40,395 - -1.9 40,397 + +0.1 40,415 + -0.8 40,490 + Atu6029 0.15 -1.2 40,510 - Atu6029 0.17 -0.8 40,598 + Atu6029 0.28 -1.0 40,598 + Atu6029 0.28 -0.6 40,598 + Atu6029 0.28 -1.2 40,600 + Atu6029 0.28 -1.6 40,622 - Atu6029 0.31 -0.9 40,682 + Atu6029 0.38 -1.9 40,728 - Atu6029 0.43 -1.7 40,760 + Atu6029 0.47 -0.8 40,760 + Atu6029 0.47 -1.3 40,765 + Atu6029 0.47 -0.6 40,773 - Atu6029 0.48 -1.3 40,773 - Atu6029 0.48 -0.8 40,783 + Atu6029 0.50 -1.9 40,827 - Atu6029 0.55 -1.0 40,903 + Atu6029 0.64 +0.4 40,911 - Atu6029 0.65 -1.0 40,929 + Atu6029 0.67 -1.6 40,929 + Atu6029 0.67 -0.1 40,929 + Atu6029 0.67 -1.6 40,932 + Atu6029 0.67 -1.4 40,938 - Atu6029 0.68 -1.1 40,947 - Atu6029 0.69 -0.7 40,965 + Atu6029 0.71 -0.5 40,985 + Atu6029 0.73 -1.2 40,998 + Atu6029 0.75 -3.3 41,006 - Atu6029 0.76 -2.0 41,008 + Atu6029 0.76 -1.3 41,054 - Atu6029 0.82 -2.6 41,054 - Atu6029 0.82 -1.8 41,054 - Atu6029 0.82 +0.5 41,054 - Atu6029 0.82 +0.5 41,054 - Atu6029 0.82 -0.9
Or see this region's nucleotide sequence