Experiment: Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Cocuture=C58C1OD2.0
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu6025 and Atu6026 are separated by 1 nucleotides Atu6026 and Atu6027 are separated by 73 nucleotides Atu6027 and Atu6028 are separated by 64 nucleotides
Atu6025: Atu6025 - ABC transporter, membrane spanning protein (nopaline), at 36,854 to 37,579
Atu6025
Atu6026: Atu6026 - ABC transporter, membrane spanning protein (nopaline), at 37,581 to 38,291
Atu6026
Atu6027: Atu6027 - ABC transporter, substrate binding protein (nopaline), at 38,365 to 39,216
Atu6027
Atu6028: Atu6028 - ABC transporter, nucleotide binding/ATPase protein (nopaline), at 39,281 to 40,054
Atu6028
Position (kb) 38
39
40 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 37.373 kb on + strand, within Atu6025 at 37.390 kb on + strand, within Atu6025 at 37.404 kb on + strand, within Atu6025 at 37.452 kb on + strand, within Atu6025 at 37.488 kb on - strand, within Atu6025 at 37.522 kb on - strand at 37.533 kb on + strand at 37.538 kb on + strand at 37.590 kb on + strand at 37.595 kb on - strand at 37.695 kb on - strand, within Atu6026 at 37.758 kb on + strand, within Atu6026 at 37.758 kb on + strand, within Atu6026 at 37.758 kb on + strand, within Atu6026 at 37.801 kb on + strand, within Atu6026 at 37.811 kb on + strand, within Atu6026 at 37.885 kb on + strand, within Atu6026 at 37.893 kb on - strand, within Atu6026 at 37.895 kb on + strand, within Atu6026 at 37.934 kb on + strand, within Atu6026 at 37.994 kb on - strand, within Atu6026 at 38.035 kb on + strand, within Atu6026 at 38.074 kb on - strand, within Atu6026 at 38.107 kb on + strand, within Atu6026 at 38.115 kb on - strand, within Atu6026 at 38.138 kb on - strand, within Atu6026 at 38.164 kb on + strand, within Atu6026 at 38.184 kb on - strand, within Atu6026 at 38.289 kb on - strand at 38.293 kb on + strand at 38.299 kb on + strand at 38.301 kb on - strand at 38.370 kb on + strand at 38.370 kb on + strand at 38.370 kb on + strand at 38.410 kb on + strand at 38.415 kb on + strand at 38.418 kb on - strand at 38.418 kb on - strand at 38.423 kb on - strand at 38.462 kb on + strand, within Atu6027 at 38.470 kb on - strand, within Atu6027 at 38.498 kb on + strand, within Atu6027 at 38.564 kb on + strand, within Atu6027 at 38.604 kb on + strand, within Atu6027 at 38.612 kb on - strand, within Atu6027 at 38.612 kb on - strand, within Atu6027 at 38.656 kb on + strand, within Atu6027 at 38.671 kb on - strand, within Atu6027 at 38.722 kb on - strand, within Atu6027 at 38.733 kb on + strand, within Atu6027 at 38.741 kb on - strand, within Atu6027 at 38.782 kb on - strand, within Atu6027 at 38.853 kb on - strand, within Atu6027 at 38.878 kb on - strand, within Atu6027 at 38.984 kb on + strand, within Atu6027 at 39.016 kb on + strand, within Atu6027 at 39.104 kb on - strand, within Atu6027 at 39.137 kb on + strand at 39.148 kb on + strand at 39.265 kb on - strand at 39.286 kb on - strand at 39.296 kb on - strand at 39.304 kb on + strand at 39.380 kb on - strand, within Atu6028 at 39.392 kb on + strand, within Atu6028 at 39.392 kb on + strand, within Atu6028 at 39.400 kb on - strand, within Atu6028 at 39.448 kb on - strand, within Atu6028 at 39.481 kb on - strand, within Atu6028 at 39.542 kb on - strand, within Atu6028 at 39.595 kb on + strand, within Atu6028 at 39.595 kb on + strand, within Atu6028 at 39.603 kb on - strand, within Atu6028 at 39.612 kb on - strand, within Atu6028 at 39.635 kb on - strand, within Atu6028 at 39.665 kb on + strand, within Atu6028 at 39.672 kb on + strand, within Atu6028 at 39.734 kb on - strand, within Atu6028 at 39.742 kb on + strand, within Atu6028 at 39.742 kb on + strand, within Atu6028 at 39.864 kb on + strand, within Atu6028 at 39.892 kb on + strand, within Atu6028 at 39.892 kb on + strand, within Atu6028 at 39.902 kb on + strand, within Atu6028 at 39.912 kb on - strand, within Atu6028 at 39.914 kb on + strand, within Atu6028 at 40.037 kb on + strand at 40.039 kb on + strand at 40.096 kb on + strand at 40.118 kb on - strand at 40.139 kb on - strand at 40.184 kb on - strand at 40.184 kb on - strand at 40.184 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Cocuture=C58C1OD2.0 remove 37,373 + Atu6025 0.71 -0.8 37,390 + Atu6025 0.74 -1.1 37,404 + Atu6025 0.76 -1.6 37,452 + Atu6025 0.82 -1.0 37,488 - Atu6025 0.87 -1.1 37,522 - -2.9 37,533 + -0.4 37,538 + -1.6 37,590 + -0.0 37,595 - -1.7 37,695 - Atu6026 0.16 -1.6 37,758 + Atu6026 0.25 -1.8 37,758 + Atu6026 0.25 -1.4 37,758 + Atu6026 0.25 -1.6 37,801 + Atu6026 0.31 -1.7 37,811 + Atu6026 0.32 -0.6 37,885 + Atu6026 0.43 -2.0 37,893 - Atu6026 0.44 +1.0 37,895 + Atu6026 0.44 -1.2 37,934 + Atu6026 0.50 -0.6 37,994 - Atu6026 0.58 -1.8 38,035 + Atu6026 0.64 -1.5 38,074 - Atu6026 0.69 -2.3 38,107 + Atu6026 0.74 -0.8 38,115 - Atu6026 0.75 -1.3 38,138 - Atu6026 0.78 -3.4 38,164 + Atu6026 0.82 -1.3 38,184 - Atu6026 0.85 -0.7 38,289 - -2.9 38,293 + -1.4 38,299 + -1.0 38,301 - -1.1 38,370 + -0.2 38,370 + +1.0 38,370 + -0.0 38,410 + -0.2 38,415 + -1.6 38,418 - -1.2 38,418 - +0.9 38,423 - -1.3 38,462 + Atu6027 0.11 -1.4 38,470 - Atu6027 0.12 -1.7 38,498 + Atu6027 0.16 -1.5 38,564 + Atu6027 0.23 -1.2 38,604 + Atu6027 0.28 -2.1 38,612 - Atu6027 0.29 -0.2 38,612 - Atu6027 0.29 -0.8 38,656 + Atu6027 0.34 -0.9 38,671 - Atu6027 0.36 -1.9 38,722 - Atu6027 0.42 -1.0 38,733 + Atu6027 0.43 -1.2 38,741 - Atu6027 0.44 +0.1 38,782 - Atu6027 0.49 +0.5 38,853 - Atu6027 0.57 -0.9 38,878 - Atu6027 0.60 -1.6 38,984 + Atu6027 0.73 -2.6 39,016 + Atu6027 0.76 -2.0 39,104 - Atu6027 0.87 -1.1 39,137 + -0.2 39,148 + -2.4 39,265 - -0.4 39,286 - -0.5 39,296 - +0.1 39,304 + -1.0 39,380 - Atu6028 0.13 -0.5 39,392 + Atu6028 0.14 -4.1 39,392 + Atu6028 0.14 -1.7 39,400 - Atu6028 0.15 -0.9 39,448 - Atu6028 0.22 -1.7 39,481 - Atu6028 0.26 -1.0 39,542 - Atu6028 0.34 -1.5 39,595 + Atu6028 0.41 -0.8 39,595 + Atu6028 0.41 -1.5 39,603 - Atu6028 0.42 -0.9 39,612 - Atu6028 0.43 -0.5 39,635 - Atu6028 0.46 -1.4 39,665 + Atu6028 0.50 -1.1 39,672 + Atu6028 0.51 -1.2 39,734 - Atu6028 0.59 -1.4 39,742 + Atu6028 0.60 -1.7 39,742 + Atu6028 0.60 +1.2 39,864 + Atu6028 0.75 -0.7 39,892 + Atu6028 0.79 -1.2 39,892 + Atu6028 0.79 -1.2 39,902 + Atu6028 0.80 -2.2 39,912 - Atu6028 0.82 -0.6 39,914 + Atu6028 0.82 -2.6 40,037 + -1.8 40,039 + -1.3 40,096 + -0.5 40,118 - -1.4 40,139 - -0.0 40,184 - -0.5 40,184 - -0.7 40,184 - -0.5
Or see this region's nucleotide sequence