Experiment: Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Cocuture=C58C1OD2.0
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu6024 and Atu6025 are separated by 114 nucleotides Atu6025 and Atu6026 are separated by 1 nucleotides Atu6026 and Atu6027 are separated by 73 nucleotides
Atu6024: Atu6024 - transcriptional regulator, LysR family, at 35,819 to 36,739
Atu6024
Atu6025: Atu6025 - ABC transporter, membrane spanning protein (nopaline), at 36,854 to 37,579
Atu6025
Atu6026: Atu6026 - ABC transporter, membrane spanning protein (nopaline), at 37,581 to 38,291
Atu6026
Atu6027: Atu6027 - ABC transporter, substrate binding protein (nopaline), at 38,365 to 39,216
Atu6027
Position (kb) 36
37
38 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 35.874 kb on + strand at 35.934 kb on + strand, within Atu6024 at 35.992 kb on - strand, within Atu6024 at 36.029 kb on + strand, within Atu6024 at 36.029 kb on + strand, within Atu6024 at 36.029 kb on + strand, within Atu6024 at 36.037 kb on - strand, within Atu6024 at 36.037 kb on - strand, within Atu6024 at 36.037 kb on - strand, within Atu6024 at 36.039 kb on + strand, within Atu6024 at 36.042 kb on - strand, within Atu6024 at 36.055 kb on + strand, within Atu6024 at 36.063 kb on - strand, within Atu6024 at 36.236 kb on + strand, within Atu6024 at 36.251 kb on + strand, within Atu6024 at 36.258 kb on + strand, within Atu6024 at 36.307 kb on + strand, within Atu6024 at 36.355 kb on + strand, within Atu6024 at 36.355 kb on + strand, within Atu6024 at 36.355 kb on + strand, within Atu6024 at 36.363 kb on - strand, within Atu6024 at 36.363 kb on - strand, within Atu6024 at 36.386 kb on + strand, within Atu6024 at 36.400 kb on - strand, within Atu6024 at 36.453 kb on - strand, within Atu6024 at 36.559 kb on + strand, within Atu6024 at 36.559 kb on + strand, within Atu6024 at 36.562 kb on - strand, within Atu6024 at 36.562 kb on - strand, within Atu6024 at 36.562 kb on - strand, within Atu6024 at 36.562 kb on - strand, within Atu6024 at 36.571 kb on + strand, within Atu6024 at 36.579 kb on + strand, within Atu6024 at 36.579 kb on - strand, within Atu6024 at 36.579 kb on - strand, within Atu6024 at 36.581 kb on + strand, within Atu6024 at 36.581 kb on + strand, within Atu6024 at 36.597 kb on + strand, within Atu6024 at 36.597 kb on + strand, within Atu6024 at 36.597 kb on + strand, within Atu6024 at 36.597 kb on + strand, within Atu6024 at 36.605 kb on - strand, within Atu6024 at 36.605 kb on - strand, within Atu6024 at 36.605 kb on - strand, within Atu6024 at 36.605 kb on - strand, within Atu6024 at 36.639 kb on + strand, within Atu6024 at 36.712 kb on - strand at 36.747 kb on + strand at 36.747 kb on + strand at 36.790 kb on - strand at 36.800 kb on + strand at 36.851 kb on + strand at 36.864 kb on + strand at 36.872 kb on + strand at 36.880 kb on - strand at 36.957 kb on + strand, within Atu6025 at 36.984 kb on + strand, within Atu6025 at 37.003 kb on + strand, within Atu6025 at 37.003 kb on + strand, within Atu6025 at 37.003 kb on + strand, within Atu6025 at 37.011 kb on - strand, within Atu6025 at 37.011 kb on - strand, within Atu6025 at 37.015 kb on - strand, within Atu6025 at 37.017 kb on + strand, within Atu6025 at 37.071 kb on + strand, within Atu6025 at 37.093 kb on + strand, within Atu6025 at 37.114 kb on - strand, within Atu6025 at 37.169 kb on + strand, within Atu6025 at 37.247 kb on + strand, within Atu6025 at 37.247 kb on + strand, within Atu6025 at 37.247 kb on + strand, within Atu6025 at 37.247 kb on + strand, within Atu6025 at 37.247 kb on + strand, within Atu6025 at 37.255 kb on + strand, within Atu6025 at 37.255 kb on - strand, within Atu6025 at 37.255 kb on - strand, within Atu6025 at 37.255 kb on - strand, within Atu6025 at 37.255 kb on - strand, within Atu6025 at 37.284 kb on + strand, within Atu6025 at 37.284 kb on + strand, within Atu6025 at 37.289 kb on + strand, within Atu6025 at 37.297 kb on - strand, within Atu6025 at 37.338 kb on + strand, within Atu6025 at 37.338 kb on + strand, within Atu6025 at 37.338 kb on + strand, within Atu6025 at 37.338 kb on + strand, within Atu6025 at 37.338 kb on + strand, within Atu6025 at 37.338 kb on + strand, within Atu6025 at 37.338 kb on + strand, within Atu6025 at 37.338 kb on + strand, within Atu6025 at 37.338 kb on + strand, within Atu6025 at 37.343 kb on + strand, within Atu6025 at 37.346 kb on - strand, within Atu6025 at 37.346 kb on - strand, within Atu6025 at 37.346 kb on - strand, within Atu6025 at 37.346 kb on - strand, within Atu6025 at 37.346 kb on - strand, within Atu6025 at 37.346 kb on - strand, within Atu6025 at 37.346 kb on - strand, within Atu6025 at 37.346 kb on - strand, within Atu6025 at 37.346 kb on - strand, within Atu6025 at 37.346 kb on - strand, within Atu6025 at 37.346 kb on - strand, within Atu6025 at 37.346 kb on - strand, within Atu6025 at 37.346 kb on - strand, within Atu6025 at 37.346 kb on - strand, within Atu6025 at 37.346 kb on - strand, within Atu6025 at 37.348 kb on + strand, within Atu6025 at 37.351 kb on - strand, within Atu6025 at 37.356 kb on - strand, within Atu6025 at 37.373 kb on + strand, within Atu6025 at 37.390 kb on + strand, within Atu6025 at 37.404 kb on + strand, within Atu6025 at 37.452 kb on + strand, within Atu6025 at 37.488 kb on - strand, within Atu6025 at 37.522 kb on - strand at 37.533 kb on + strand at 37.538 kb on + strand at 37.590 kb on + strand at 37.595 kb on - strand at 37.695 kb on - strand, within Atu6026 at 37.758 kb on + strand, within Atu6026 at 37.758 kb on + strand, within Atu6026 at 37.758 kb on + strand, within Atu6026 at 37.801 kb on + strand, within Atu6026 at 37.811 kb on + strand, within Atu6026 at 37.885 kb on + strand, within Atu6026 at 37.893 kb on - strand, within Atu6026 at 37.895 kb on + strand, within Atu6026 at 37.934 kb on + strand, within Atu6026 at 37.994 kb on - strand, within Atu6026 at 38.035 kb on + strand, within Atu6026 at 38.074 kb on - strand, within Atu6026 at 38.107 kb on + strand, within Atu6026 at 38.115 kb on - strand, within Atu6026 at 38.138 kb on - strand, within Atu6026 at 38.164 kb on + strand, within Atu6026 at 38.184 kb on - strand, within Atu6026 at 38.289 kb on - strand at 38.293 kb on + strand at 38.299 kb on + strand at 38.301 kb on - strand at 38.370 kb on + strand at 38.370 kb on + strand at 38.370 kb on + strand at 38.410 kb on + strand at 38.415 kb on + strand at 38.418 kb on - strand at 38.418 kb on - strand at 38.423 kb on - strand at 38.462 kb on + strand, within Atu6027 at 38.470 kb on - strand, within Atu6027 at 38.498 kb on + strand, within Atu6027 at 38.564 kb on + strand, within Atu6027
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Cocuture=C58C1OD2.0 remove 35,874 + -0.1 35,934 + Atu6024 0.12 +0.5 35,992 - Atu6024 0.19 -2.1 36,029 + Atu6024 0.23 +0.2 36,029 + Atu6024 0.23 +0.4 36,029 + Atu6024 0.23 -0.0 36,037 - Atu6024 0.24 +0.0 36,037 - Atu6024 0.24 +0.3 36,037 - Atu6024 0.24 -0.5 36,039 + Atu6024 0.24 -0.6 36,042 - Atu6024 0.24 -0.2 36,055 + Atu6024 0.26 +0.1 36,063 - Atu6024 0.26 -0.0 36,236 + Atu6024 0.45 +2.3 36,251 + Atu6024 0.47 +0.0 36,258 + Atu6024 0.48 -0.7 36,307 + Atu6024 0.53 +0.7 36,355 + Atu6024 0.58 +0.0 36,355 + Atu6024 0.58 +0.0 36,355 + Atu6024 0.58 +0.6 36,363 - Atu6024 0.59 -0.1 36,363 - Atu6024 0.59 -0.1 36,386 + Atu6024 0.62 +0.2 36,400 - Atu6024 0.63 -0.5 36,453 - Atu6024 0.69 +0.6 36,559 + Atu6024 0.80 +0.3 36,559 + Atu6024 0.80 +0.5 36,562 - Atu6024 0.81 +0.0 36,562 - Atu6024 0.81 -0.1 36,562 - Atu6024 0.81 -0.9 36,562 - Atu6024 0.81 -0.3 36,571 + Atu6024 0.82 +0.1 36,579 + Atu6024 0.83 +0.2 36,579 - Atu6024 0.83 -1.0 36,579 - Atu6024 0.83 -0.0 36,581 + Atu6024 0.83 -0.1 36,581 + Atu6024 0.83 -0.6 36,597 + Atu6024 0.84 +0.1 36,597 + Atu6024 0.84 -0.2 36,597 + Atu6024 0.84 -0.2 36,597 + Atu6024 0.84 -0.1 36,605 - Atu6024 0.85 +0.0 36,605 - Atu6024 0.85 +0.5 36,605 - Atu6024 0.85 -0.0 36,605 - Atu6024 0.85 +0.2 36,639 + Atu6024 0.89 -0.1 36,712 - +0.4 36,747 + +0.0 36,747 + -0.0 36,790 - +0.5 36,800 + -0.6 36,851 + -0.0 36,864 + -2.0 36,872 + +0.8 36,880 - -1.6 36,957 + Atu6025 0.14 -1.1 36,984 + Atu6025 0.18 +0.4 37,003 + Atu6025 0.21 -0.7 37,003 + Atu6025 0.21 -1.1 37,003 + Atu6025 0.21 -1.6 37,011 - Atu6025 0.22 -2.0 37,011 - Atu6025 0.22 -1.4 37,015 - Atu6025 0.22 -2.4 37,017 + Atu6025 0.22 -2.0 37,071 + Atu6025 0.30 -1.4 37,093 + Atu6025 0.33 -1.8 37,114 - Atu6025 0.36 -1.8 37,169 + Atu6025 0.43 -1.3 37,247 + Atu6025 0.54 +0.0 37,247 + Atu6025 0.54 -1.6 37,247 + Atu6025 0.54 -0.0 37,247 + Atu6025 0.54 -3.0 37,247 + Atu6025 0.54 -1.0 37,255 + Atu6025 0.55 -2.1 37,255 - Atu6025 0.55 -1.9 37,255 - Atu6025 0.55 -1.1 37,255 - Atu6025 0.55 -0.8 37,255 - Atu6025 0.55 -0.7 37,284 + Atu6025 0.59 -2.2 37,284 + Atu6025 0.59 -1.0 37,289 + Atu6025 0.60 -1.0 37,297 - Atu6025 0.61 -1.0 37,338 + Atu6025 0.67 -0.7 37,338 + Atu6025 0.67 -2.0 37,338 + Atu6025 0.67 -1.2 37,338 + Atu6025 0.67 -2.8 37,338 + Atu6025 0.67 -1.0 37,338 + Atu6025 0.67 -1.7 37,338 + Atu6025 0.67 -2.2 37,338 + Atu6025 0.67 -0.9 37,338 + Atu6025 0.67 -0.3 37,343 + Atu6025 0.67 -1.3 37,346 - Atu6025 0.68 -1.3 37,346 - Atu6025 0.68 -2.4 37,346 - Atu6025 0.68 -2.0 37,346 - Atu6025 0.68 -2.2 37,346 - Atu6025 0.68 +0.1 37,346 - Atu6025 0.68 -2.4 37,346 - Atu6025 0.68 -0.5 37,346 - Atu6025 0.68 -1.4 37,346 - Atu6025 0.68 +0.2 37,346 - Atu6025 0.68 -2.4 37,346 - Atu6025 0.68 -1.6 37,346 - Atu6025 0.68 -1.7 37,346 - Atu6025 0.68 -0.9 37,346 - Atu6025 0.68 -1.3 37,346 - Atu6025 0.68 -1.6 37,348 + Atu6025 0.68 -1.0 37,351 - Atu6025 0.68 -1.0 37,356 - Atu6025 0.69 -1.0 37,373 + Atu6025 0.71 -0.8 37,390 + Atu6025 0.74 -1.1 37,404 + Atu6025 0.76 -1.6 37,452 + Atu6025 0.82 -1.0 37,488 - Atu6025 0.87 -1.1 37,522 - -2.9 37,533 + -0.4 37,538 + -1.6 37,590 + -0.0 37,595 - -1.7 37,695 - Atu6026 0.16 -1.6 37,758 + Atu6026 0.25 -1.8 37,758 + Atu6026 0.25 -1.4 37,758 + Atu6026 0.25 -1.6 37,801 + Atu6026 0.31 -1.7 37,811 + Atu6026 0.32 -0.6 37,885 + Atu6026 0.43 -2.0 37,893 - Atu6026 0.44 +1.0 37,895 + Atu6026 0.44 -1.2 37,934 + Atu6026 0.50 -0.6 37,994 - Atu6026 0.58 -1.8 38,035 + Atu6026 0.64 -1.5 38,074 - Atu6026 0.69 -2.3 38,107 + Atu6026 0.74 -0.8 38,115 - Atu6026 0.75 -1.3 38,138 - Atu6026 0.78 -3.4 38,164 + Atu6026 0.82 -1.3 38,184 - Atu6026 0.85 -0.7 38,289 - -2.9 38,293 + -1.4 38,299 + -1.0 38,301 - -1.1 38,370 + -0.2 38,370 + +1.0 38,370 + -0.0 38,410 + -0.2 38,415 + -1.6 38,418 - -1.2 38,418 - +0.9 38,423 - -1.3 38,462 + Atu6027 0.11 -1.4 38,470 - Atu6027 0.12 -1.7 38,498 + Atu6027 0.16 -1.5 38,564 + Atu6027 0.23 -1.2
Or see this region's nucleotide sequence