Strain Fitness in Agrobacterium fabrum C58 around Atu6020

Experiment: Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Cocuture=C58C1OD2.0

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu6019 and Atu6020 overlap by 4 nucleotidesAtu6020 and Atu6021 overlap by 4 nucleotides Atu6019: Atu6019 - D-nopaline dehydrogenase, at 28,273 to 29,691 Atu6019 Atu6020: Atu6020 - conserved hypothetical protein, at 29,688 to 29,981 Atu6020 Atu6021: Atu6021 - D-nopaline dehydrogenase, at 29,978 to 31,096 Atu6021 Position (kb) 29 30Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3at 28.765 kb on - strand, within Atu6019at 28.774 kb on + strand, within Atu6019at 28.781 kb on + strand, within Atu6019at 28.781 kb on + strand, within Atu6019at 28.781 kb on + strand, within Atu6019at 28.784 kb on + strand, within Atu6019at 28.789 kb on - strand, within Atu6019at 28.789 kb on - strand, within Atu6019at 28.795 kb on + strand, within Atu6019at 28.795 kb on + strand, within Atu6019at 28.803 kb on - strand, within Atu6019at 28.805 kb on + strand, within Atu6019at 28.805 kb on + strand, within Atu6019at 28.813 kb on - strand, within Atu6019at 28.863 kb on + strand, within Atu6019at 28.869 kb on - strand, within Atu6019at 29.003 kb on - strand, within Atu6019at 29.005 kb on + strand, within Atu6019at 29.025 kb on - strand, within Atu6019at 29.044 kb on - strand, within Atu6019at 29.049 kb on - strand, within Atu6019at 29.091 kb on - strand, within Atu6019at 29.091 kb on - strand, within Atu6019at 29.094 kb on - strand, within Atu6019at 29.094 kb on - strand, within Atu6019at 29.127 kb on - strand, within Atu6019at 29.189 kb on + strand, within Atu6019at 29.189 kb on + strand, within Atu6019at 29.195 kb on - strand, within Atu6019at 29.197 kb on - strand, within Atu6019at 29.197 kb on - strand, within Atu6019at 29.202 kb on + strand, within Atu6019at 29.202 kb on + strand, within Atu6019at 29.210 kb on - strand, within Atu6019at 29.239 kb on + strand, within Atu6019at 29.255 kb on - strand, within Atu6019at 29.266 kb on + strand, within Atu6019at 29.266 kb on + strand, within Atu6019at 29.271 kb on + strand, within Atu6019at 29.403 kb on - strand, within Atu6019at 29.405 kb on + strand, within Atu6019at 29.413 kb on - strand, within Atu6019at 29.423 kb on + strand, within Atu6019at 29.423 kb on - strand, within Atu6019at 29.470 kb on + strand, within Atu6019at 29.481 kb on + strand, within Atu6019at 29.562 kb on + strandat 29.565 kb on - strandat 29.594 kb on + strandat 29.626 kb on - strandat 29.700 kb on + strandat 29.754 kb on + strand, within Atu6020at 29.754 kb on + strand, within Atu6020at 29.820 kb on - strand, within Atu6020at 29.832 kb on - strand, within Atu6020at 29.832 kb on - strand, within Atu6020at 29.834 kb on + strand, within Atu6020at 29.885 kb on - strand, within Atu6020at 29.931 kb on - strand, within Atu6020at 29.990 kb on - strandat 30.034 kb on + strandat 30.082 kb on + strandat 30.129 kb on - strand, within Atu6021at 30.181 kb on + strand, within Atu6021at 30.189 kb on - strand, within Atu6021at 30.199 kb on - strand, within Atu6021at 30.295 kb on - strand, within Atu6021at 30.354 kb on + strand, within Atu6021at 30.455 kb on - strand, within Atu6021at 30.455 kb on - strand, within Atu6021at 30.500 kb on - strand, within Atu6021at 30.504 kb on + strand, within Atu6021at 30.521 kb on - strand, within Atu6021at 30.545 kb on + strand, within Atu6021at 30.583 kb on + strand, within Atu6021at 30.583 kb on + strand, within Atu6021at 30.588 kb on + strand, within Atu6021at 30.601 kb on - strand, within Atu6021at 30.621 kb on + strand, within Atu6021at 30.629 kb on - strand, within Atu6021at 30.635 kb on + strand, within Atu6021at 30.643 kb on - strand, within Atu6021at 30.652 kb on + strand, within Atu6021at 30.657 kb on + strand, within Atu6021at 30.657 kb on + strand, within Atu6021at 30.657 kb on + strand, within Atu6021at 30.660 kb on - strand, within Atu6021at 30.660 kb on - strand, within Atu6021at 30.660 kb on - strand, within Atu6021at 30.798 kb on + strand, within Atu6021at 30.888 kb on + strand, within Atu6021at 30.891 kb on - strand, within Atu6021at 30.918 kb on - strand, within Atu6021at 30.930 kb on + strand, within Atu6021at 30.930 kb on + strand, within Atu6021at 30.935 kb on + strand, within Atu6021at 30.938 kb on - strand, within Atu6021at 30.942 kb on + strand, within Atu6021at 30.942 kb on + strand, within Atu6021at 30.950 kb on - strand, within Atu6021at 30.950 kb on - strand, within Atu6021at 30.950 kb on - strand, within Atu6021at 30.950 kb on - strand, within Atu6021at 30.960 kb on - strand, within Atu6021

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Cocuture=C58C1OD2.0
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28,765 - Atu6019 0.35 -3.6
28,774 + Atu6019 0.35 -3.8
28,781 + Atu6019 0.36 -3.7
28,781 + Atu6019 0.36 -1.5
28,781 + Atu6019 0.36 -1.4
28,784 + Atu6019 0.36 -3.8
28,789 - Atu6019 0.36 -1.9
28,789 - Atu6019 0.36 -1.8
28,795 + Atu6019 0.37 -2.6
28,795 + Atu6019 0.37 -3.4
28,803 - Atu6019 0.37 -3.7
28,805 + Atu6019 0.37 -0.8
28,805 + Atu6019 0.37 -3.1
28,813 - Atu6019 0.38 -2.5
28,863 + Atu6019 0.42 -2.3
28,869 - Atu6019 0.42 -3.1
29,003 - Atu6019 0.51 -1.7
29,005 + Atu6019 0.52 -4.2
29,025 - Atu6019 0.53 -2.9
29,044 - Atu6019 0.54 -3.4
29,049 - Atu6019 0.55 -2.6
29,091 - Atu6019 0.58 -0.8
29,091 - Atu6019 0.58 -4.4
29,094 - Atu6019 0.58 -3.4
29,094 - Atu6019 0.58 -0.0
29,127 - Atu6019 0.60 -2.0
29,189 + Atu6019 0.65 -3.4
29,189 + Atu6019 0.65 -3.7
29,195 - Atu6019 0.65 -4.0
29,197 - Atu6019 0.65 -3.4
29,197 - Atu6019 0.65 -0.0
29,202 + Atu6019 0.65 -3.2
29,202 + Atu6019 0.65 -2.3
29,210 - Atu6019 0.66 -2.5
29,239 + Atu6019 0.68 -3.3
29,255 - Atu6019 0.69 -2.6
29,266 + Atu6019 0.70 -3.2
29,266 + Atu6019 0.70 -3.0
29,271 + Atu6019 0.70 -2.9
29,403 - Atu6019 0.80 -3.5
29,405 + Atu6019 0.80 -1.9
29,413 - Atu6019 0.80 -1.0
29,423 + Atu6019 0.81 -3.4
29,423 - Atu6019 0.81 -3.5
29,470 + Atu6019 0.84 -2.9
29,481 + Atu6019 0.85 -3.4
29,562 + -2.1
29,565 - -3.0
29,594 + -3.2
29,626 - -2.6
29,700 + -3.3
29,754 + Atu6020 0.22 -3.6
29,754 + Atu6020 0.22 -4.4
29,820 - Atu6020 0.45 -2.2
29,832 - Atu6020 0.49 -1.4
29,832 - Atu6020 0.49 -1.6
29,834 + Atu6020 0.50 -4.4
29,885 - Atu6020 0.67 -2.7
29,931 - Atu6020 0.83 -3.9
29,990 - -2.0
30,034 + -2.4
30,082 + -3.3
30,129 - Atu6021 0.13 -1.6
30,181 + Atu6021 0.18 -3.9
30,189 - Atu6021 0.19 -2.2
30,199 - Atu6021 0.20 -1.3
30,295 - Atu6021 0.28 -2.7
30,354 + Atu6021 0.34 -2.0
30,455 - Atu6021 0.43 -1.3
30,455 - Atu6021 0.43 +3.1
30,500 - Atu6021 0.47 -4.4
30,504 + Atu6021 0.47 -3.0
30,521 - Atu6021 0.49 -2.7
30,545 + Atu6021 0.51 -2.5
30,583 + Atu6021 0.54 -3.0
30,583 + Atu6021 0.54 -5.0
30,588 + Atu6021 0.55 -3.9
30,601 - Atu6021 0.56 -1.5
30,621 + Atu6021 0.57 -3.6
30,629 - Atu6021 0.58 -3.0
30,635 + Atu6021 0.59 -3.1
30,643 - Atu6021 0.59 -3.0
30,652 + Atu6021 0.60 -3.4
30,657 + Atu6021 0.61 -1.8
30,657 + Atu6021 0.61 -1.9
30,657 + Atu6021 0.61 -3.5
30,660 - Atu6021 0.61 -3.5
30,660 - Atu6021 0.61 -1.9
30,660 - Atu6021 0.61 -2.8
30,798 + Atu6021 0.73 -2.5
30,888 + Atu6021 0.81 -1.6
30,891 - Atu6021 0.82 -2.8
30,918 - Atu6021 0.84 -2.0
30,930 + Atu6021 0.85 -3.3
30,930 + Atu6021 0.85 -2.1
30,935 + Atu6021 0.86 -3.1
30,938 - Atu6021 0.86 -2.3
30,942 + Atu6021 0.86 -2.3
30,942 + Atu6021 0.86 -3.6
30,950 - Atu6021 0.87 -3.9
30,950 - Atu6021 0.87 -2.1
30,950 - Atu6021 0.87 -3.8
30,950 - Atu6021 0.87 -1.7
30,960 - Atu6021 0.88 -2.8

Or see this region's nucleotide sequence