Strain Fitness in Agrobacterium fabrum C58 around Atu4759

Experiment: Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Cocuture=C58C1OD2.0

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Cocuture=C58C1OD2.0
1,926,819	-				+0.5
1,926,858	+				-0.6
1,926,858	+				+0.9
1,926,898	-		Atu4758	0.13	+0.0
1,926,916	+		Atu4758	0.15	-0.3
1,926,948	-		Atu4758	0.18	+0.1
1,926,948	-		Atu4758	0.18	+0.1
1,926,957	+		Atu4758	0.19	+0.1
1,926,958	+		Atu4758	0.19	-0.4
1,926,980	-		Atu4758	0.21	-0.6
1,927,004	-		Atu4758	0.24	+0.9
1,927,069	-		Atu4758	0.30	-0.3
1,927,186	+		Atu4758	0.42	-0.7
1,927,189	-		Atu4758	0.42	-0.6
1,927,226	+		Atu4758	0.45	-1.2
1,927,303	+		Atu4758	0.53	+0.1
1,927,458	+		Atu4758	0.68	-0.7
1,927,458	+		Atu4758	0.68	-0.2
1,927,466	+		Atu4758	0.69	-1.4
1,927,466	-		Atu4758	0.69	-0.2
1,927,481	+		Atu4758	0.71	-0.3
1,927,515	+		Atu4758	0.74	-0.6
1,927,663	+		Atu4758	0.89	+0.1
1,927,697	+				+0.8
1,927,702	+				-1.1
1,927,729	-				+0.3
1,927,879	+		Atu4759	0.10	-0.6
1,927,914	+		Atu4759	0.14	+0.9
1,927,936	+		Atu4759	0.16	+0.4
1,927,981	-		Atu4759	0.21	+0.3
1,928,008	+		Atu4759	0.23	-0.7
1,928,120	-		Atu4759	0.35	+0.2
1,928,176	+		Atu4759	0.40	+0.1
1,928,236	+		Atu4759	0.46	+0.0
1,928,254	-		Atu4759	0.48	-0.6
1,928,265	-		Atu4759	0.49	-0.3
1,928,315	-		Atu4759	0.54	+0.1
1,928,349	+		Atu4759	0.58	-0.2
1,928,356	+		Atu4759	0.58	-1.4
1,928,424	-		Atu4759	0.65	+0.2
1,928,508	-		Atu4759	0.74	+0.6
1,928,545	-		Atu4759	0.77	+0.4
1,928,563	-		Atu4759	0.79	-0.9
1,928,587	+		Atu4759	0.82	+1.2
1,928,677	-				-0.4
1,928,721	+				+0.4
1,928,930	-				-0.1
1,928,930	-				-0.2
1,928,930	-				-0.0
1,928,930	-				-0.4
1,929,019	-		Atu4760	0.11	-0.6
1,929,062	-		Atu4760	0.14	+1.7
1,929,066	-		Atu4760	0.14	+0.5
1,929,248	+		Atu4760	0.27	+0.6
1,929,300	+		Atu4760	0.30	+0.2
1,929,347	-		Atu4760	0.33	-0.7
1,929,347	-		Atu4760	0.33	-1.6
1,929,349	+		Atu4760	0.34	-1.7
1,929,383	-		Atu4760	0.36	+0.3
1,929,504	+		Atu4760	0.44	-0.3
1,929,517	-		Atu4760	0.45	-0.8
1,929,533	+		Atu4760	0.46	+0.0
1,929,533	+		Atu4760	0.46	+0.0
1,929,541	-		Atu4760	0.47	-0.3
1,929,613	+		Atu4760	0.52	+2.4
1,929,700	-		Atu4760	0.58	-0.0
1,929,769	-		Atu4760	0.63	-0.9