Strain Fitness in Agrobacterium fabrum C58 around Atu4730

Experiment: Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Cocuture=C58C1OD2.0

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Cocuture=C58C1OD2.0
1,894,048	+		Atu4729	0.43	+0.3
1,894,048	+		Atu4729	0.43	+0.0
1,894,053	+		Atu4729	0.44	-1.1
1,894,145	-		Atu4729	0.49	-2.0
1,894,148	-		Atu4729	0.50	+0.8
1,894,197	+		Atu4729	0.53	-0.4
1,894,203	-		Atu4729	0.53	-2.0
1,894,231	+		Atu4729	0.55	+0.0
1,894,250	+		Atu4729	0.56	+0.7
1,894,318	-		Atu4729	0.60	+0.5
1,894,339	-		Atu4729	0.61	-0.6
1,894,409	+		Atu4729	0.66	-1.7
1,894,566	+		Atu4729	0.76	+0.5
1,894,709	+		Atu4729	0.85	+0.7
1,894,709	+		Atu4729	0.85	+1.3
1,894,709	+		Atu4729	0.85	-4.4
1,894,847	-				-0.9
1,894,947	+				-0.0
1,894,955	-				-0.0
1,894,998	+				+0.7
1,895,006	-				-2.4
1,895,006	-				+0.2
1,895,153	-		Atu4730	0.21	+0.4
1,895,205	+		Atu4730	0.27	-0.4
1,895,215	-		Atu4730	0.28	+0.4
1,895,223	-		Atu4730	0.29	-0.2
1,895,236	-		Atu4730	0.30	-0.0
1,895,262	+		Atu4730	0.33	+0.9
1,895,361	-		Atu4730	0.43	-0.1
1,895,368	-		Atu4730	0.44	-0.7
1,895,454	-		Atu4730	0.53	-0.2
1,895,454	-		Atu4730	0.53	+0.2
1,895,454	-		Atu4730	0.53	-0.4
1,895,478	+		Atu4730	0.56	-1.6
1,895,489	+		Atu4730	0.57	-0.0
1,895,569	+		Atu4730	0.65	-0.6
1,895,636	+		Atu4730	0.72	-0.7
1,895,636	+		Atu4730	0.72	-0.6
1,895,644	-		Atu4730	0.73	-0.4
1,895,767	+		Atu4730	0.86	-2.9
1,895,770	-		Atu4730	0.86	-0.8
1,895,885	+				-0.0
1,895,885	+				-0.4
1,895,885	+				-0.3
1,895,893	-				-0.1
1,895,934	+				+0.2
1,895,959	+				-0.4
1,896,009	+				+1.3
1,896,262	-		Atu4731	0.15	+1.2
1,896,440	+		Atu4731	0.22	-0.1
1,896,457	+		Atu4731	0.23	-0.2
1,896,457	+		Atu4731	0.23	+0.0
1,896,457	+		Atu4731	0.23	-0.2
1,896,457	+		Atu4731	0.23	-0.4
1,896,458	-		Atu4731	0.23	-1.0
1,896,458	-		Atu4731	0.23	+0.1
1,896,465	-		Atu4731	0.23	-0.3
1,896,465	-		Atu4731	0.23	+0.3
1,896,465	-		Atu4731	0.23	-0.4
1,896,465	-		Atu4731	0.23	-0.2
1,896,465	-		Atu4731	0.23	+0.6
1,896,465	-		Atu4731	0.23	-2.3
1,896,528	-		Atu4731	0.26	-0.6
1,896,767	+		Atu4731	0.36	-0.8
1,896,821	+		Atu4731	0.38	-0.5
1,896,821	-		Atu4731	0.38	-0.7
1,896,839	-		Atu4731	0.39	+0.2
1,896,841	-		Atu4731	0.39	+0.3
1,896,852	-		Atu4731	0.39	+0.4