Strain Fitness in Agrobacterium fabrum C58 around Atu3683

Experiment: Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Cocuture=C58C1OD2.0

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu3682 and Atu3683 are separated by 11 nucleotidesAtu3683 and Atu3684 are separated by 4 nucleotides Atu3682: Atu3682 - non-ribosomal peptide synthetase, siderophore biosynthesis protein, at 742,507 to 749,706 Atu3682 Atu3683: Atu3683 - peptide synthetase, siderophore biosynthesis protein, at 749,718 to 757,409 Atu3683 Atu3684: Atu3684 - siderophore biosynthesis protein, at 757,414 to 759,081 Atu3684 Position (kb) 749 750 751 752 753 754 755 756 757 758Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 748.748 kb on + strand, within Atu3682at 748.758 kb on + strand, within Atu3682at 748.780 kb on + strand, within Atu3682at 748.962 kb on + strand, within Atu3682at 748.999 kb on - strandat 749.065 kb on - strandat 749.186 kb on - strandat 749.275 kb on + strandat 749.385 kb on - strandat 749.414 kb on + strandat 749.419 kb on + strandat 749.506 kb on + strandat 749.556 kb on - strandat 749.635 kb on + strandat 749.721 kb on - strandat 749.757 kb on + strandat 749.855 kb on + strandat 749.922 kb on + strandat 749.928 kb on - strandat 749.930 kb on - strandat 749.990 kb on - strandat 750.123 kb on + strandat 750.128 kb on + strandat 750.138 kb on + strandat 750.143 kb on + strandat 750.151 kb on - strandat 750.186 kb on - strandat 750.242 kb on - strandat 750.305 kb on + strandat 750.487 kb on - strandat 750.487 kb on - strandat 750.487 kb on - strandat 750.497 kb on - strand, within Atu3683at 750.536 kb on + strand, within Atu3683at 750.555 kb on - strand, within Atu3683at 750.609 kb on + strand, within Atu3683at 750.617 kb on - strand, within Atu3683at 750.713 kb on - strand, within Atu3683at 750.715 kb on - strand, within Atu3683at 750.874 kb on + strand, within Atu3683at 750.875 kb on + strand, within Atu3683at 750.883 kb on - strand, within Atu3683at 750.883 kb on - strand, within Atu3683at 750.888 kb on - strand, within Atu3683at 751.009 kb on - strand, within Atu3683at 751.105 kb on - strand, within Atu3683at 751.117 kb on - strand, within Atu3683at 751.140 kb on + strand, within Atu3683at 751.148 kb on - strand, within Atu3683at 751.186 kb on + strand, within Atu3683at 751.196 kb on - strand, within Atu3683at 751.212 kb on + strand, within Atu3683at 751.212 kb on + strand, within Atu3683at 751.304 kb on + strand, within Atu3683at 751.311 kb on + strand, within Atu3683at 751.376 kb on + strand, within Atu3683at 751.390 kb on + strand, within Atu3683at 751.390 kb on + strand, within Atu3683at 751.398 kb on - strand, within Atu3683at 751.459 kb on - strand, within Atu3683at 751.482 kb on + strand, within Atu3683at 751.487 kb on + strand, within Atu3683at 751.500 kb on - strand, within Atu3683at 751.524 kb on + strand, within Atu3683at 751.586 kb on + strand, within Atu3683at 751.622 kb on + strand, within Atu3683at 751.630 kb on - strand, within Atu3683at 751.630 kb on - strand, within Atu3683at 751.858 kb on + strand, within Atu3683at 752.065 kb on + strand, within Atu3683at 752.123 kb on + strand, within Atu3683at 752.176 kb on - strand, within Atu3683at 752.187 kb on + strand, within Atu3683at 752.190 kb on - strand, within Atu3683at 752.195 kb on - strand, within Atu3683at 752.195 kb on - strand, within Atu3683at 752.226 kb on - strand, within Atu3683at 752.264 kb on - strand, within Atu3683at 752.291 kb on - strand, within Atu3683at 752.296 kb on - strand, within Atu3683at 752.381 kb on - strand, within Atu3683at 752.401 kb on + strand, within Atu3683at 752.420 kb on + strand, within Atu3683at 752.467 kb on + strand, within Atu3683at 752.518 kb on + strand, within Atu3683at 752.530 kb on + strand, within Atu3683at 752.535 kb on + strand, within Atu3683at 752.542 kb on + strand, within Atu3683at 752.543 kb on - strand, within Atu3683at 752.618 kb on + strand, within Atu3683at 752.666 kb on + strand, within Atu3683at 752.671 kb on + strand, within Atu3683at 752.797 kb on - strand, within Atu3683at 752.898 kb on + strand, within Atu3683at 752.945 kb on + strand, within Atu3683at 752.945 kb on + strand, within Atu3683at 752.945 kb on + strand, within Atu3683at 752.953 kb on - strand, within Atu3683at 752.953 kb on - strand, within Atu3683at 752.953 kb on - strand, within Atu3683at 752.953 kb on - strand, within Atu3683at 752.953 kb on - strand, within Atu3683at 752.953 kb on - strand, within Atu3683at 752.954 kb on + strand, within Atu3683at 752.968 kb on - strand, within Atu3683at 752.973 kb on - strand, within Atu3683at 752.978 kb on + strand, within Atu3683at 753.033 kb on + strand, within Atu3683at 753.041 kb on - strand, within Atu3683at 753.131 kb on + strand, within Atu3683at 753.172 kb on + strand, within Atu3683at 753.220 kb on + strand, within Atu3683at 753.285 kb on + strand, within Atu3683at 753.491 kb on + strand, within Atu3683at 753.494 kb on - strand, within Atu3683at 753.554 kb on - strand, within Atu3683at 753.582 kb on + strand, within Atu3683at 753.622 kb on + strand, within Atu3683at 753.658 kb on - strand, within Atu3683at 753.710 kb on + strand, within Atu3683at 753.718 kb on - strand, within Atu3683at 753.767 kb on + strand, within Atu3683at 753.767 kb on + strand, within Atu3683at 753.775 kb on - strand, within Atu3683at 753.858 kb on + strand, within Atu3683at 753.858 kb on + strand, within Atu3683at 753.858 kb on + strand, within Atu3683at 753.890 kb on - strand, within Atu3683at 753.971 kb on + strand, within Atu3683at 753.971 kb on + strand, within Atu3683at 753.979 kb on - strand, within Atu3683at 753.979 kb on - strand, within Atu3683at 753.979 kb on - strand, within Atu3683at 754.035 kb on + strand, within Atu3683at 754.055 kb on + strand, within Atu3683at 754.123 kb on - strand, within Atu3683at 754.213 kb on + strand, within Atu3683at 754.320 kb on + strand, within Atu3683at 754.369 kb on - strand, within Atu3683at 754.377 kb on + strand, within Atu3683at 754.402 kb on - strand, within Atu3683at 754.450 kb on - strand, within Atu3683at 754.470 kb on - strand, within Atu3683at 754.485 kb on + strand, within Atu3683at 754.508 kb on - strand, within Atu3683at 754.524 kb on + strand, within Atu3683at 754.616 kb on + strand, within Atu3683at 754.705 kb on + strand, within Atu3683at 754.759 kb on + strand, within Atu3683at 754.792 kb on + strand, within Atu3683at 754.792 kb on - strand, within Atu3683at 754.828 kb on + strand, within Atu3683at 755.011 kb on - strand, within Atu3683at 755.011 kb on - strand, within Atu3683at 755.026 kb on + strand, within Atu3683at 755.026 kb on + strand, within Atu3683at 755.044 kb on - strand, within Atu3683at 755.050 kb on - strand, within Atu3683at 755.117 kb on + strand, within Atu3683at 755.146 kb on + strand, within Atu3683at 755.171 kb on + strand, within Atu3683at 755.227 kb on - strand, within Atu3683at 755.259 kb on - strand, within Atu3683at 755.405 kb on + strand, within Atu3683at 755.561 kb on - strand, within Atu3683at 755.562 kb on - strand, within Atu3683at 755.634 kb on + strand, within Atu3683at 755.680 kb on - strand, within Atu3683at 755.687 kb on + strand, within Atu3683at 755.800 kb on + strand, within Atu3683at 755.813 kb on - strand, within Atu3683at 755.850 kb on + strand, within Atu3683at 755.858 kb on - strand, within Atu3683at 755.860 kb on + strand, within Atu3683at 755.868 kb on - strand, within Atu3683at 755.952 kb on + strand, within Atu3683at 755.977 kb on + strand, within Atu3683at 756.066 kb on + strand, within Atu3683at 756.081 kb on + strand, within Atu3683at 756.086 kb on + strand, within Atu3683at 756.089 kb on - strand, within Atu3683at 756.100 kb on + strand, within Atu3683at 756.104 kb on + strand, within Atu3683at 756.300 kb on - strand, within Atu3683at 756.315 kb on - strand, within Atu3683at 756.320 kb on - strand, within Atu3683at 756.390 kb on + strand, within Atu3683at 756.506 kb on + strand, within Atu3683at 756.529 kb on - strand, within Atu3683at 756.620 kb on + strand, within Atu3683at 756.687 kb on - strandat 756.719 kb on + strandat 756.727 kb on - strandat 756.762 kb on + strandat 756.843 kb on + strandat 756.844 kb on + strandat 756.844 kb on + strandat 756.852 kb on - strandat 756.854 kb on - strandat 756.884 kb on + strandat 756.907 kb on - strandat 756.944 kb on - strandat 757.033 kb on - strandat 757.085 kb on + strandat 757.093 kb on - strandat 757.138 kb on - strandat 757.178 kb on + strandat 757.198 kb on - strandat 757.226 kb on + strandat 757.234 kb on - strandat 757.337 kb on + strandat 757.343 kb on - strandat 757.394 kb on + strandat 757.402 kb on + strandat 757.469 kb on - strandat 757.601 kb on + strand, within Atu3684at 757.606 kb on + strand, within Atu3684at 757.621 kb on + strand, within Atu3684at 757.629 kb on - strand, within Atu3684at 757.633 kb on + strand, within Atu3684at 757.633 kb on + strand, within Atu3684at 757.641 kb on - strand, within Atu3684at 757.680 kb on - strand, within Atu3684at 757.717 kb on + strand, within Atu3684at 757.756 kb on + strand, within Atu3684at 757.924 kb on + strand, within Atu3684at 757.940 kb on + strand, within Atu3684at 758.150 kb on + strand, within Atu3684at 758.168 kb on - strand, within Atu3684at 758.177 kb on - strand, within Atu3684at 758.283 kb on + strand, within Atu3684at 758.378 kb on + strand, within Atu3684

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Cocuture=C58C1OD2.0
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748,748 + Atu3682 0.87 -0.5
748,758 + Atu3682 0.87 -0.8
748,780 + Atu3682 0.87 -0.4
748,962 + Atu3682 0.90 +0.3
748,999 - -1.8
749,065 - +0.1
749,186 - +1.9
749,275 + +0.2
749,385 - +1.0
749,414 + +0.9
749,419 + -0.6
749,506 + +0.8
749,556 - +0.1
749,635 + +0.5
749,721 - +0.5
749,757 + +0.0
749,855 + -0.0
749,922 + -0.4
749,928 - -0.4
749,930 - -0.4
749,990 - +0.2
750,123 + +0.2
750,128 + +1.0
750,138 + +0.1
750,143 + -0.0
750,151 - -1.6
750,186 - +1.4
750,242 - -1.0
750,305 + -0.2
750,487 - +1.1
750,487 - -0.2
750,487 - -0.1
750,497 - Atu3683 0.10 +0.3
750,536 + Atu3683 0.11 -0.7
750,555 - Atu3683 0.11 -0.3
750,609 + Atu3683 0.12 +0.5
750,617 - Atu3683 0.12 +0.2
750,713 - Atu3683 0.13 +0.2
750,715 - Atu3683 0.13 +0.3
750,874 + Atu3683 0.15 +0.3
750,875 + Atu3683 0.15 +0.1
750,883 - Atu3683 0.15 -1.0
750,883 - Atu3683 0.15 +0.8
750,888 - Atu3683 0.15 -0.3
751,009 - Atu3683 0.17 -0.3
751,105 - Atu3683 0.18 +0.4
751,117 - Atu3683 0.18 +0.4
751,140 + Atu3683 0.18 +0.3
751,148 - Atu3683 0.19 +0.7
751,186 + Atu3683 0.19 -0.1
751,196 - Atu3683 0.19 +0.5
751,212 + Atu3683 0.19 +0.6
751,212 + Atu3683 0.19 +0.2
751,304 + Atu3683 0.21 +0.3
751,311 + Atu3683 0.21 +0.1
751,376 + Atu3683 0.22 +0.2
751,390 + Atu3683 0.22 -3.1
751,390 + Atu3683 0.22 +0.5
751,398 - Atu3683 0.22 +1.9
751,459 - Atu3683 0.23 -0.2
751,482 + Atu3683 0.23 -0.7
751,487 + Atu3683 0.23 -0.5
751,500 - Atu3683 0.23 -0.7
751,524 + Atu3683 0.23 -0.1
751,586 + Atu3683 0.24 -0.2
751,622 + Atu3683 0.25 -0.3
751,630 - Atu3683 0.25 +0.3
751,630 - Atu3683 0.25 -0.9
751,858 + Atu3683 0.28 -0.1
752,065 + Atu3683 0.31 -0.4
752,123 + Atu3683 0.31 -0.1
752,176 - Atu3683 0.32 +0.2
752,187 + Atu3683 0.32 +0.8
752,190 - Atu3683 0.32 +0.5
752,195 - Atu3683 0.32 -0.0
752,195 - Atu3683 0.32 -0.1
752,226 - Atu3683 0.33 +0.1
752,264 - Atu3683 0.33 -1.4
752,291 - Atu3683 0.33 +0.5
752,296 - Atu3683 0.34 -0.2
752,381 - Atu3683 0.35 +0.3
752,401 + Atu3683 0.35 +0.1
752,420 + Atu3683 0.35 -0.5
752,467 + Atu3683 0.36 -0.3
752,518 + Atu3683 0.36 -2.0
752,530 + Atu3683 0.37 -0.4
752,535 + Atu3683 0.37 +0.2
752,542 + Atu3683 0.37 -2.7
752,543 - Atu3683 0.37 -0.5
752,618 + Atu3683 0.38 +0.1
752,666 + Atu3683 0.38 -1.1
752,671 + Atu3683 0.38 -0.7
752,797 - Atu3683 0.40 -0.7
752,898 + Atu3683 0.41 +0.3
752,945 + Atu3683 0.42 +0.0
752,945 + Atu3683 0.42 +0.0
752,945 + Atu3683 0.42 -1.0
752,953 - Atu3683 0.42 +0.4
752,953 - Atu3683 0.42 +0.1
752,953 - Atu3683 0.42 +0.3
752,953 - Atu3683 0.42 +0.0
752,953 - Atu3683 0.42 +0.2
752,953 - Atu3683 0.42 +0.9
752,954 + Atu3683 0.42 -1.5
752,968 - Atu3683 0.42 +0.0
752,973 - Atu3683 0.42 -0.5
752,978 + Atu3683 0.42 +0.2
753,033 + Atu3683 0.43 +0.1
753,041 - Atu3683 0.43 -0.0
753,131 + Atu3683 0.44 +0.4
753,172 + Atu3683 0.45 -0.6
753,220 + Atu3683 0.46 -0.3
753,285 + Atu3683 0.46 +0.6
753,491 + Atu3683 0.49 -0.9
753,494 - Atu3683 0.49 +0.2
753,554 - Atu3683 0.50 -0.1
753,582 + Atu3683 0.50 +1.0
753,622 + Atu3683 0.51 +0.1
753,658 - Atu3683 0.51 -0.3
753,710 + Atu3683 0.52 +0.7
753,718 - Atu3683 0.52 -0.6
753,767 + Atu3683 0.53 -0.5
753,767 + Atu3683 0.53 +0.4
753,775 - Atu3683 0.53 -0.4
753,858 + Atu3683 0.54 +0.4
753,858 + Atu3683 0.54 -0.3
753,858 + Atu3683 0.54 +1.7
753,890 - Atu3683 0.54 -0.3
753,971 + Atu3683 0.55 -0.0
753,971 + Atu3683 0.55 -0.1
753,979 - Atu3683 0.55 -0.9
753,979 - Atu3683 0.55 -0.6
753,979 - Atu3683 0.55 -0.6
754,035 + Atu3683 0.56 +1.2
754,055 + Atu3683 0.56 -0.0
754,123 - Atu3683 0.57 -0.1
754,213 + Atu3683 0.58 +0.2
754,320 + Atu3683 0.60 -0.6
754,369 - Atu3683 0.60 +0.3
754,377 + Atu3683 0.61 -0.3
754,402 - Atu3683 0.61 +0.2
754,450 - Atu3683 0.62 +0.2
754,470 - Atu3683 0.62 -0.3
754,485 + Atu3683 0.62 +0.7
754,508 - Atu3683 0.62 +0.0
754,524 + Atu3683 0.62 +0.2
754,616 + Atu3683 0.64 +1.0
754,705 + Atu3683 0.65 +0.7
754,759 + Atu3683 0.66 -0.8
754,792 + Atu3683 0.66 -0.3
754,792 - Atu3683 0.66 +0.1
754,828 + Atu3683 0.66 -0.1
755,011 - Atu3683 0.69 -0.0
755,011 - Atu3683 0.69 -1.0
755,026 + Atu3683 0.69 +0.4
755,026 + Atu3683 0.69 +0.5
755,044 - Atu3683 0.69 -0.9
755,050 - Atu3683 0.69 +0.3
755,117 + Atu3683 0.70 +0.0
755,146 + Atu3683 0.71 +0.1
755,171 + Atu3683 0.71 -0.9
755,227 - Atu3683 0.72 -0.3
755,259 - Atu3683 0.72 +0.3
755,405 + Atu3683 0.74 +0.5
755,561 - Atu3683 0.76 -0.1
755,562 - Atu3683 0.76 -0.4
755,634 + Atu3683 0.77 +0.1
755,680 - Atu3683 0.78 +0.1
755,687 + Atu3683 0.78 +0.0
755,800 + Atu3683 0.79 +0.9
755,813 - Atu3683 0.79 -1.1
755,850 + Atu3683 0.80 -1.4
755,858 - Atu3683 0.80 -0.9
755,860 + Atu3683 0.80 -0.3
755,868 - Atu3683 0.80 +0.5
755,952 + Atu3683 0.81 -1.1
755,977 + Atu3683 0.81 -0.4
756,066 + Atu3683 0.83 -0.1
756,081 + Atu3683 0.83 +0.0
756,086 + Atu3683 0.83 -0.1
756,089 - Atu3683 0.83 +0.7
756,100 + Atu3683 0.83 +0.1
756,104 + Atu3683 0.83 +0.5
756,300 - Atu3683 0.86 +0.0
756,315 - Atu3683 0.86 +0.1
756,320 - Atu3683 0.86 -0.3
756,390 + Atu3683 0.87 -0.3
756,506 + Atu3683 0.88 +0.3
756,529 - Atu3683 0.89 -0.0
756,620 + Atu3683 0.90 +0.5
756,687 - -2.0
756,719 + +0.1
756,727 - -0.3
756,762 + +0.0
756,843 + -0.3
756,844 + -0.1
756,844 + -0.3
756,852 - +0.0
756,854 - -1.3
756,884 + -0.4
756,907 - -1.1
756,944 - -0.1
757,033 - +0.6
757,085 + +0.2
757,093 - +0.3
757,138 - +1.3
757,178 + -0.5
757,198 - +0.7
757,226 + +0.6
757,234 - -0.2
757,337 + +0.1
757,343 - -2.8
757,394 + -0.6
757,402 + -0.7
757,469 - -0.3
757,601 + Atu3684 0.11 +1.2
757,606 + Atu3684 0.12 -2.0
757,621 + Atu3684 0.12 +0.2
757,629 - Atu3684 0.13 +0.1
757,633 + Atu3684 0.13 +0.5
757,633 + Atu3684 0.13 -0.8
757,641 - Atu3684 0.14 +0.4
757,680 - Atu3684 0.16 -0.9
757,717 + Atu3684 0.18 +0.1
757,756 + Atu3684 0.21 +0.1
757,924 + Atu3684 0.31 -0.8
757,940 + Atu3684 0.32 -0.5
758,150 + Atu3684 0.44 +0.9
758,168 - Atu3684 0.45 -0.2
758,177 - Atu3684 0.46 -0.3
758,283 + Atu3684 0.52 -1.9
758,378 + Atu3684 0.58 -0.3

Or see this region's nucleotide sequence