Experiment: Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Cocuture=C58C1OD2.0
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3629 and Atu3630 are separated by 63 nucleotides Atu3630 and Atu3631 are separated by 452 nucleotides
Atu3629: Atu3629 - site-specific tyrosine recombinase XerD, at 680,734 to 681,729
Atu3629
Atu3630: Atu3630 - acetyl-CoA carboxylase carboxyltransferase subunit alpha, at 681,793 to 682,746
Atu3630
Atu3631: Atu3631 - hypothetical protein, at 683,199 to 684,338
Atu3631
Position (kb) 681
682
683 Strain fitness (log2 ratio) -1
0
1 at 681.699 kb on - strand at 682.887 kb on - strand at 682.962 kb on + strand at 682.989 kb on + strand at 682.994 kb on + strand at 683.002 kb on - strand at 683.002 kb on - strand at 683.002 kb on - strand at 683.002 kb on - strand at 683.002 kb on - strand at 683.002 kb on - strand at 683.052 kb on + strand at 683.061 kb on + strand at 683.066 kb on + strand at 683.077 kb on + strand at 683.580 kb on - strand, within Atu3631 at 683.609 kb on - strand, within Atu3631 at 683.615 kb on - strand, within Atu3631 at 683.646 kb on - strand, within Atu3631 at 683.648 kb on + strand, within Atu3631
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Cocuture=C58C1OD2.0 remove 681,699 - -0.8 682,887 - -0.4 682,962 + +0.1 682,989 + +0.3 682,994 + -0.5 683,002 - +0.4 683,002 - -0.2 683,002 - +1.0 683,002 - +1.0 683,002 - +0.4 683,002 - +0.1 683,052 + -0.6 683,061 + +0.3 683,066 + -0.9 683,077 + -0.2 683,580 - Atu3631 0.33 -0.8 683,609 - Atu3631 0.36 -0.7 683,615 - Atu3631 0.36 +0.5 683,646 - Atu3631 0.39 +0.1 683,648 + Atu3631 0.39 -0.1
Or see this region's nucleotide sequence