Strain Fitness in Agrobacterium fabrum C58 around Atu2555

Experiment: Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Cocuture=C58C1OD2.0

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Cocuture=C58C1OD2.0
2,527,952	+				-0.4
2,527,962	-				-1.8
2,528,125	-		Atu2554	0.20	-0.4
2,528,152	+		Atu2554	0.22	-0.8
2,528,214	-		Atu2554	0.28	+0.7
2,528,513	+		Atu2554	0.56	-0.0
2,528,574	-		Atu2554	0.62	-1.4
2,529,245	+		Atu2555	0.27	-1.0
2,529,245	+		Atu2555	0.27	-2.4
2,529,335	+		Atu2555	0.35	-2.4
2,529,494	+		Atu2555	0.50	-2.2
2,529,568	-		Atu2555	0.57	+1.0
2,529,660	-		Atu2555	0.65	-0.9
2,529,771	+		Atu2555	0.75	-2.6
2,529,948	-				-0.9
2,530,118	+				-1.0
2,530,171	-				+0.0
2,530,255	+				+0.6
2,530,526	-		Atu2557	0.56	+0.4
2,530,533	+		Atu2557	0.60	-1.4
2,530,677	-				+0.1
2,530,849	+				+0.3
2,530,860	-				+0.8
2,530,873	+				+0.4
2,530,881	-				+0.2
2,530,881	-				-0.2
2,530,970	+				+0.9