Strain Fitness in Agrobacterium fabrum C58 around Atu2527

Experiment: Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Cocuture=C58C1OD2.0

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Cocuture=C58C1OD2.0
2,499,213	+		Atu2525	0.63	+1.0
2,499,216	-		Atu2525	0.63	-0.5
2,499,221	-		Atu2525	0.64	-0.1
2,499,225	+		Atu2525	0.64	+0.2
2,499,278	+		Atu2525	0.68	+0.0
2,499,284	+		Atu2525	0.68	+0.9
2,499,284	+		Atu2525	0.68	+1.0
2,499,373	+		Atu2525	0.75	+0.6
2,499,375	+		Atu2525	0.75	+2.1
2,499,383	-		Atu2525	0.76	+0.1
2,499,455	+		Atu2525	0.81	+0.3
2,499,456	+		Atu2525	0.81	-0.6
2,499,526	-		Atu2525	0.86	-0.4
2,499,681	+				+0.3
2,499,689	-				+0.0
2,499,707	+				+0.9
2,499,707	+				-0.4
2,499,707	+				-0.1
2,499,715	-				+0.1
2,499,715	-				-0.4
2,499,715	-				+1.9
2,499,739	+				-0.2
2,499,751	+				+0.6
2,499,931	+		Atu2526	0.19	-0.4
2,500,012	-		Atu2526	0.42	-0.5
2,500,043	-		Atu2526	0.52	-2.3
2,500,096	+		Atu2526	0.67	+0.9
2,500,101	+		Atu2526	0.69	-0.1
2,500,242	-				+0.1
2,500,342	-		Atu2527	0.16	+0.3
2,500,352	-		Atu2527	0.17	-0.4
2,500,431	+		Atu2527	0.26	+1.2
2,500,579	+		Atu2527	0.42	+0.3
2,500,579	+		Atu2527	0.42	+0.5
2,500,587	-		Atu2527	0.43	+0.7
2,500,624	+		Atu2527	0.47	+0.2
2,500,684	+		Atu2527	0.54	+0.3
2,500,689	+		Atu2527	0.55	+0.1
2,500,696	+		Atu2527	0.56	+1.0
2,500,768	-		Atu2527	0.64	+0.4
2,500,819	+		Atu2527	0.69	-0.4
2,500,829	-		Atu2527	0.70	+0.7
2,500,978	+		Atu2527	0.87	+0.2
2,501,096	+				+0.1
2,501,118	-				-0.0
2,501,129	-				+0.8
2,501,250	+		Atu2528	0.14	+0.2
2,501,250	+		Atu2528	0.14	+0.4
2,501,288	+		Atu2528	0.18	-0.5
2,501,293	+		Atu2528	0.18	-0.1
2,501,417	-		Atu2528	0.30	+1.4
2,501,432	+		Atu2528	0.31	-0.6
2,501,432	+		Atu2528	0.31	-0.1
2,501,684	+		Atu2528	0.55	+0.1
2,501,699	-		Atu2528	0.56	-1.2
2,501,699	-		Atu2528	0.56	+0.7
2,501,704	+		Atu2528	0.57	-0.5
2,501,729	+		Atu2528	0.59	-0.1
2,501,761	+		Atu2528	0.62	+0.0
2,501,775	+		Atu2528	0.64	+0.5
2,501,813	-		Atu2528	0.67	-1.0
2,501,814	-		Atu2528	0.67	-0.5
2,501,845	+		Atu2528	0.70	+0.2
2,501,950	+		Atu2528	0.80	-0.4
2,501,960	-		Atu2528	0.81	+0.1
2,501,993	+		Atu2528	0.84	+0.4
2,502,055	-				+0.9