Strain Fitness in Agrobacterium fabrum C58 around Atu2347

Experiment: Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Cocuture=C58C1OD2.0

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Cocuture=C58C1OD2.0
2,323,161	+		Atu2346	0.27	-2.9
2,323,169	-		Atu2346	0.28	-0.9
2,323,294	+		Atu2346	0.39	-2.3
2,323,302	-		Atu2346	0.39	-1.4
2,323,313	-		Atu2346	0.40	-2.5
2,323,328	-		Atu2346	0.41	-2.2
2,323,384	+		Atu2346	0.46	-2.6
2,323,392	-		Atu2346	0.47	-2.3
2,323,428	+		Atu2346	0.50	-3.4
2,323,428	+		Atu2346	0.50	-2.7
2,323,451	-		Atu2346	0.52	-2.4
2,323,478	+		Atu2346	0.54	-2.8
2,323,486	-		Atu2346	0.55	-1.6
2,323,655	+		Atu2346	0.69	-3.1
2,323,655	+		Atu2346	0.69	-2.8
2,323,663	-		Atu2346	0.69	-2.3
2,323,664	-		Atu2346	0.69	-2.6
2,323,668	-		Atu2346	0.70	-1.7
2,323,673	-		Atu2346	0.70	-2.0
2,323,742	-		Atu2346	0.76	-2.0
2,323,868	-		Atu2346	0.86	-1.0
2,323,876	-		Atu2346	0.87	-1.4
2,323,878	-		Atu2346	0.87	-3.7
2,323,878	-		Atu2346	0.87	+0.4
2,323,883	+		Atu2346	0.88	-2.6
2,323,899	+		Atu2346	0.89	-2.3
2,324,025	-				-0.4
2,324,035	+				-2.2
2,324,047	+				-2.9
2,324,047	+				+0.6
2,324,055	-				-2.3
2,324,055	-				-1.4
2,324,082	+				-2.2
2,324,173	+				-2.0
2,324,252	-		Atu2347	0.15	-3.0
2,324,285	+		Atu2347	0.17	-2.4
2,324,291	+		Atu2347	0.17	-1.6
2,324,318	-		Atu2347	0.19	-2.8
2,324,476	+		Atu2347	0.29	-2.1
2,324,536	-		Atu2347	0.33	-4.3
2,324,587	-		Atu2347	0.36	-2.8
2,324,590	+		Atu2347	0.37	-2.5
2,324,618	+		Atu2347	0.38	-2.2
2,324,626	-		Atu2347	0.39	-2.2
2,324,706	+		Atu2347	0.44	-1.8
2,324,712	+		Atu2347	0.45	-2.6
2,324,909	+		Atu2347	0.57	-0.7
2,324,919	+		Atu2347	0.58	-2.8
2,324,926	+		Atu2347	0.58	-2.1
2,325,083	+		Atu2347	0.69	-2.8
2,325,093	-		Atu2347	0.69	-4.0
2,325,186	-		Atu2347	0.75	-1.7
2,325,198	+		Atu2347	0.76	-1.8
2,325,210	+		Atu2347	0.77	-2.4
2,325,428	+				-1.6
2,325,461	+				-2.9
2,325,482	+				-2.6
2,325,633	-				+0.4
2,325,750	+				+1.4
2,325,868	-		Atu2348	0.20	+2.4
2,326,010	+		Atu2348	0.33	+2.1
2,326,018	+		Atu2348	0.34	+3.6
2,326,028	+		Atu2348	0.35	+1.4
2,326,055	+		Atu2348	0.38	+1.1
2,326,081	-		Atu2348	0.40	+1.1
2,326,105	-		Atu2348	0.42	+1.7
2,326,117	-		Atu2348	0.43	+0.6
2,326,123	-		Atu2348	0.44	+0.3
2,326,166	+		Atu2348	0.48	+0.2
2,326,232	+		Atu2348	0.54	+1.1
2,326,267	-		Atu2348	0.57	+1.4
2,326,277	-		Atu2348	0.58	+0.9
2,326,299	-		Atu2348	0.60	-0.7
2,326,342	+		Atu2348	0.65	+1.6
2,326,413	+		Atu2348	0.71	+1.8