Experiment: Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Cocuture=C58C1OD2.0
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0916 and Atu0917 are separated by 302 nucleotides Atu0917 and Atu0918 overlap by 8 nucleotides Atu0918 and Atu0919 are separated by 21 nucleotides
Atu0916: Atu0916 - transcriptional regulator, at 905,301 to 905,729
Atu0916
Atu0917: Atu0917 - hypothetical protein, at 906,032 to 906,454
Atu0917
Atu0918: Atu0918 - hypothetical protein, at 906,447 to 907,283
Atu0918
Atu0919: Atu0919 - hypothetical protein, at 907,305 to 907,721
Atu0919
Position (kb) 906
907 Strain fitness (log2 ratio) -2
-1
0
1
2 at 905.221 kb on + strand at 905.433 kb on + strand, within Atu0916 at 905.772 kb on + strand at 905.788 kb on - strand at 906.142 kb on + strand, within Atu0917 at 906.254 kb on + strand, within Atu0917 at 906.270 kb on - strand, within Atu0917 at 906.324 kb on - strand, within Atu0917 at 906.324 kb on - strand, within Atu0917 at 906.351 kb on + strand, within Atu0917 at 906.383 kb on - strand, within Atu0917 at 906.385 kb on + strand, within Atu0917 at 906.393 kb on - strand, within Atu0917 at 906.403 kb on - strand, within Atu0917 at 906.711 kb on - strand, within Atu0918 at 906.742 kb on + strand, within Atu0918 at 906.747 kb on + strand, within Atu0918 at 906.750 kb on - strand, within Atu0918 at 906.800 kb on + strand, within Atu0918 at 906.800 kb on + strand, within Atu0918 at 906.808 kb on - strand, within Atu0918 at 906.832 kb on + strand, within Atu0918 at 906.999 kb on - strand, within Atu0918 at 906.999 kb on - strand, within Atu0918 at 907.001 kb on + strand, within Atu0918 at 907.004 kb on - strand, within Atu0918 at 907.004 kb on - strand, within Atu0918 at 907.083 kb on + strand, within Atu0918 at 907.173 kb on - strand, within Atu0918 at 907.175 kb on + strand, within Atu0918 at 907.175 kb on + strand, within Atu0918 at 907.220 kb on + strand at 907.220 kb on + strand at 907.228 kb on - strand at 907.228 kb on - strand at 907.239 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Cocuture=C58C1OD2.0 remove 905,221 + -1.4 905,433 + Atu0916 0.31 -2.5 905,772 + +0.3 905,788 - -0.2 906,142 + Atu0917 0.26 -2.1 906,254 + Atu0917 0.52 +2.0 906,270 - Atu0917 0.56 +0.3 906,324 - Atu0917 0.69 -0.2 906,324 - Atu0917 0.69 -0.3 906,351 + Atu0917 0.75 +0.1 906,383 - Atu0917 0.83 -0.4 906,385 + Atu0917 0.83 +0.2 906,393 - Atu0917 0.85 +0.4 906,403 - Atu0917 0.88 +0.2 906,711 - Atu0918 0.32 -0.3 906,742 + Atu0918 0.35 +0.3 906,747 + Atu0918 0.36 -0.2 906,750 - Atu0918 0.36 +0.6 906,800 + Atu0918 0.42 -0.3 906,800 + Atu0918 0.42 +0.5 906,808 - Atu0918 0.43 +0.1 906,832 + Atu0918 0.46 +0.3 906,999 - Atu0918 0.66 -0.3 906,999 - Atu0918 0.66 -0.0 907,001 + Atu0918 0.66 +0.3 907,004 - Atu0918 0.67 +0.3 907,004 - Atu0918 0.67 -1.2 907,083 + Atu0918 0.76 +0.1 907,173 - Atu0918 0.87 -0.0 907,175 + Atu0918 0.87 +0.8 907,175 + Atu0918 0.87 -0.2 907,220 + -0.4 907,220 + +0.1 907,228 - +0.4 907,228 - -1.2 907,239 - -0.1
Or see this region's nucleotide sequence