Experiment: Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Cocuture=C58C1OD2.0
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0754 and Atu0755 are separated by 395 nucleotides Atu0755 and Atu0756 are separated by 163 nucleotides Atu0756 and Atu0757 are separated by 30 nucleotides
Atu0754: Atu0754 - chorismate synthase, at 751,629 to 752,726
Atu0754
Atu0755: Atu0755 - hypothetical protein, at 753,122 to 753,424
Atu0755
Atu0756: Atu0756 - phosphoglycerate mutase, at 753,588 to 754,178
Atu0756
Atu0757: Atu0757 - enoyl-(acyl-carrier-protein) reductase, at 754,209 to 755,027
Atu0757
Position (kb) 753
754 Strain fitness (log2 ratio) -1
0
1
2 at 752.851 kb on - strand at 752.865 kb on - strand at 753.205 kb on + strand, within Atu0755 at 753.212 kb on + strand, within Atu0755 at 753.222 kb on + strand, within Atu0755 at 753.270 kb on + strand, within Atu0755 at 753.282 kb on + strand, within Atu0755 at 753.441 kb on - strand at 753.441 kb on - strand at 753.497 kb on + strand at 753.565 kb on + strand at 753.606 kb on + strand at 753.606 kb on + strand at 753.779 kb on + strand, within Atu0756 at 753.881 kb on + strand, within Atu0756 at 753.882 kb on + strand, within Atu0756 at 753.882 kb on + strand, within Atu0756 at 753.890 kb on - strand, within Atu0756 at 753.947 kb on + strand, within Atu0756 at 753.948 kb on + strand, within Atu0756 at 753.956 kb on - strand, within Atu0756 at 753.974 kb on + strand, within Atu0756 at 754.047 kb on - strand, within Atu0756 at 754.214 kb on - strand at 754.214 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Cocuture=C58C1OD2.0 remove 752,851 - +0.3 752,865 - +0.5 753,205 + Atu0755 0.27 -0.5 753,212 + Atu0755 0.30 -0.6 753,222 + Atu0755 0.33 -1.0 753,270 + Atu0755 0.49 -0.4 753,282 + Atu0755 0.53 -0.6 753,441 - -0.2 753,441 - -1.1 753,497 + +0.6 753,565 + -0.4 753,606 + +0.0 753,606 + +0.2 753,779 + Atu0756 0.32 +0.4 753,881 + Atu0756 0.50 +0.0 753,882 + Atu0756 0.50 -0.8 753,882 + Atu0756 0.50 -0.8 753,890 - Atu0756 0.51 +0.7 753,947 + Atu0756 0.61 -0.2 753,948 + Atu0756 0.61 +2.6 753,956 - Atu0756 0.62 -1.4 753,974 + Atu0756 0.65 +0.1 754,047 - Atu0756 0.78 +0.0 754,214 - +0.0 754,214 - +0.5
Or see this region's nucleotide sequence