Experiment: Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Cocuture=C58C1OD2.0
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0753 and Atu0754 are separated by 12 nucleotides Atu0754 and Atu0755 are separated by 395 nucleotides Atu0755 and Atu0756 are separated by 163 nucleotides
Atu0753: Atu0753 - 3,4-dihydroxy-2-butanone-4-phoshate synthase/GTP cyclohydrolase II, at 750,516 to 751,616
Atu0753
Atu0754: Atu0754 - chorismate synthase, at 751,629 to 752,726
Atu0754
Atu0755: Atu0755 - hypothetical protein, at 753,122 to 753,424
Atu0755
Atu0756: Atu0756 - phosphoglycerate mutase, at 753,588 to 754,178
Atu0756
Position (kb) 751
752
753 Strain fitness (log2 ratio) -2
-1
0
1 at 750.901 kb on + strand, within Atu0753 at 750.929 kb on + strand, within Atu0753 at 750.931 kb on + strand, within Atu0753 at 750.931 kb on + strand, within Atu0753 at 750.939 kb on - strand, within Atu0753 at 750.939 kb on - strand, within Atu0753 at 750.944 kb on - strand, within Atu0753 at 751.174 kb on + strand, within Atu0753 at 751.192 kb on - strand, within Atu0753 at 751.289 kb on + strand, within Atu0753 at 751.289 kb on + strand, within Atu0753 at 751.289 kb on + strand, within Atu0753 at 751.297 kb on - strand, within Atu0753 at 751.396 kb on + strand, within Atu0753 at 751.464 kb on - strand, within Atu0753 at 751.545 kb on + strand at 751.613 kb on - strand at 752.851 kb on - strand at 752.865 kb on - strand at 753.205 kb on + strand, within Atu0755 at 753.212 kb on + strand, within Atu0755 at 753.222 kb on + strand, within Atu0755 at 753.270 kb on + strand, within Atu0755 at 753.282 kb on + strand, within Atu0755 at 753.441 kb on - strand at 753.441 kb on - strand at 753.497 kb on + strand at 753.565 kb on + strand at 753.606 kb on + strand at 753.606 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Cocuture=C58C1OD2.0 remove 750,901 + Atu0753 0.35 -1.3 750,929 + Atu0753 0.38 -0.0 750,931 + Atu0753 0.38 -1.3 750,931 + Atu0753 0.38 -0.6 750,939 - Atu0753 0.38 +0.1 750,939 - Atu0753 0.38 -0.1 750,944 - Atu0753 0.39 -0.2 751,174 + Atu0753 0.60 -0.8 751,192 - Atu0753 0.61 +0.3 751,289 + Atu0753 0.70 -0.4 751,289 + Atu0753 0.70 -1.8 751,289 + Atu0753 0.70 -0.2 751,297 - Atu0753 0.71 +0.7 751,396 + Atu0753 0.80 -0.3 751,464 - Atu0753 0.86 -0.7 751,545 + -0.1 751,613 - +1.2 752,851 - +0.3 752,865 - +0.5 753,205 + Atu0755 0.27 -0.5 753,212 + Atu0755 0.30 -0.6 753,222 + Atu0755 0.33 -1.0 753,270 + Atu0755 0.49 -0.4 753,282 + Atu0755 0.53 -0.6 753,441 - -0.2 753,441 - -1.1 753,497 + +0.6 753,565 + -0.4 753,606 + +0.0 753,606 + +0.2
Or see this region's nucleotide sequence