Experiment: Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Cocuture=C58C1OD2.0
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0148 and Atu0149 are separated by 184 nucleotides Atu0149 and Atu0150 are separated by 6 nucleotides Atu0150 and Atu0151 are separated by 75 nucleotides Atu0151 and Atu0152 are separated by 70 nucleotides Atu0152 and Atu0153 overlap by 11 nucleotides
Atu0148: Atu0148 - Atu0148-1 mutant of a conserved hypothetical protein, at 156,680 to 157,276
Atu0148
Atu0149: Atu0149 - enoyl-(acyl-carrier-protein) reductase, at 157,461 to 158,267
Atu0149
Atu0150: Atu0150 - 3-oxoacyl-(acyl-carrier-protein) synthase, at 158,274 to 159,497
Atu0150
Atu0151: Atu0151 - D-3-hydroxydecanoyl-(acyl carrier-protein) dehydratase, at 159,573 to 160,088
Atu0151
Atu0152: Atu0152 - hypothetical protein, at 160,159 to 160,416
Atu0152
Atu0153: Atu0153 - transcriptional regulator, Fur family, at 160,406 to 160,825
Atu0153
Position (kb) 158
159
160 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 157.291 kb on + strand at 157.482 kb on - strand at 157.482 kb on - strand at 157.482 kb on - strand at 157.561 kb on + strand, within Atu0149 at 157.588 kb on - strand, within Atu0149 at 157.795 kb on + strand, within Atu0149 at 157.828 kb on + strand, within Atu0149 at 157.868 kb on + strand, within Atu0149 at 158.091 kb on + strand, within Atu0149 at 158.160 kb on - strand, within Atu0149 at 158.257 kb on + strand at 160.217 kb on + strand, within Atu0152 at 160.329 kb on - strand, within Atu0152 at 160.429 kb on - strand at 160.442 kb on - strand at 160.447 kb on - strand at 160.457 kb on - strand, within Atu0153 at 160.481 kb on + strand, within Atu0153 at 160.481 kb on + strand, within Atu0153
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Cocuture=C58C1OD2.0 remove 157,291 + -0.3 157,482 - -3.3 157,482 - +0.2 157,482 - -1.0 157,561 + Atu0149 0.12 -0.3 157,588 - Atu0149 0.16 +0.7 157,795 + Atu0149 0.41 +0.6 157,828 + Atu0149 0.45 +0.7 157,868 + Atu0149 0.50 +0.5 158,091 + Atu0149 0.78 +0.6 158,160 - Atu0149 0.87 -0.6 158,257 + +1.6 160,217 + Atu0152 0.22 +0.4 160,329 - Atu0152 0.66 -2.1 160,429 - +0.2 160,442 - -1.6 160,447 - -2.9 160,457 - Atu0153 0.12 -2.1 160,481 + Atu0153 0.18 -0.2 160,481 + Atu0153 0.18 -3.1
Or see this region's nucleotide sequence