Strain Fitness in Agrobacterium fabrum C58 around Atu6111

Experiment: Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Cocuture=C58C1OD2.0

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu6110 and Atu6111 overlap by 1 nucleotidesAtu6111 and Atu6112 are separated by 361 nucleotides Atu6110: Atu6110 - antirestriction protein, at 131,360 to 132,286 Atu6110 Atu6111: Atu6111 - conserved hypothetical protein, at 132,286 to 133,200 Atu6111 Atu6112: Atu6112 - conserved hypothetical protein, at 133,562 to 134,212 Atu6112 Position (kb) 132 133 134Strain fitness (log2 ratio) -2 -1 0 1at 131.319 kb on + strandat 131.337 kb on - strandat 131.445 kb on + strandat 131.453 kb on - strand, within Atu6110at 131.477 kb on + strand, within Atu6110at 131.477 kb on + strand, within Atu6110at 131.477 kb on + strand, within Atu6110at 131.518 kb on + strand, within Atu6110at 131.518 kb on + strand, within Atu6110at 131.518 kb on + strand, within Atu6110at 131.518 kb on + strand, within Atu6110at 131.518 kb on + strand, within Atu6110at 131.526 kb on - strand, within Atu6110at 131.526 kb on - strand, within Atu6110at 131.526 kb on - strand, within Atu6110at 131.537 kb on - strand, within Atu6110at 131.644 kb on - strand, within Atu6110at 131.665 kb on - strand, within Atu6110at 131.665 kb on - strand, within Atu6110at 131.734 kb on + strand, within Atu6110at 131.734 kb on + strand, within Atu6110at 131.736 kb on + strand, within Atu6110at 131.904 kb on + strand, within Atu6110at 131.914 kb on + strand, within Atu6110at 131.918 kb on - strand, within Atu6110at 131.963 kb on - strand, within Atu6110at 131.981 kb on + strand, within Atu6110at 132.020 kb on + strand, within Atu6110at 132.022 kb on + strand, within Atu6110at 132.028 kb on - strand, within Atu6110at 132.079 kb on + strand, within Atu6110at 132.097 kb on - strand, within Atu6110at 132.097 kb on - strand, within Atu6110at 132.097 kb on - strand, within Atu6110at 132.102 kb on - strand, within Atu6110at 132.102 kb on - strand, within Atu6110at 132.112 kb on - strand, within Atu6110at 132.123 kb on + strand, within Atu6110at 132.163 kb on - strand, within Atu6110at 132.199 kb on + strandat 132.213 kb on + strandat 132.246 kb on + strandat 132.254 kb on - strandat 132.372 kb on - strandat 132.558 kb on - strand, within Atu6111at 132.623 kb on + strand, within Atu6111at 132.672 kb on - strand, within Atu6111at 132.698 kb on - strand, within Atu6111at 132.698 kb on - strand, within Atu6111at 132.731 kb on - strand, within Atu6111at 132.738 kb on + strand, within Atu6111at 132.858 kb on + strand, within Atu6111at 132.877 kb on - strand, within Atu6111at 132.920 kb on - strand, within Atu6111at 132.920 kb on - strand, within Atu6111at 132.977 kb on - strand, within Atu6111at 133.044 kb on + strand, within Atu6111at 133.047 kb on - strand, within Atu6111at 133.057 kb on - strand, within Atu6111at 133.120 kb on - strandat 133.125 kb on - strandat 133.209 kb on + strandat 133.284 kb on + strandat 133.323 kb on + strandat 133.393 kb on - strandat 133.407 kb on + strandat 133.514 kb on + strandat 133.527 kb on + strandat 133.527 kb on + strandat 133.559 kb on + strandat 133.596 kb on - strandat 133.650 kb on + strand, within Atu6112at 133.673 kb on - strand, within Atu6112at 133.704 kb on - strand, within Atu6112at 133.829 kb on + strand, within Atu6112at 133.830 kb on + strand, within Atu6112at 134.068 kb on - strand, within Atu6112at 134.124 kb on + strand, within Atu6112at 134.145 kb on - strand, within Atu6112at 134.154 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Cocuture=C58C1OD2.0
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131,319 + +0.2
131,337 - +0.2
131,445 + -1.1
131,453 - Atu6110 0.10 -0.6
131,477 + Atu6110 0.13 +0.6
131,477 + Atu6110 0.13 +0.2
131,477 + Atu6110 0.13 -0.6
131,518 + Atu6110 0.17 +0.2
131,518 + Atu6110 0.17 -0.5
131,518 + Atu6110 0.17 +0.3
131,518 + Atu6110 0.17 +0.4
131,518 + Atu6110 0.17 -0.7
131,526 - Atu6110 0.18 +0.3
131,526 - Atu6110 0.18 -0.1
131,526 - Atu6110 0.18 -0.1
131,537 - Atu6110 0.19 -0.1
131,644 - Atu6110 0.31 +0.2
131,665 - Atu6110 0.33 -0.1
131,665 - Atu6110 0.33 +0.6
131,734 + Atu6110 0.40 +0.2
131,734 + Atu6110 0.40 -0.1
131,736 + Atu6110 0.41 -0.5
131,904 + Atu6110 0.59 +0.1
131,914 + Atu6110 0.60 -0.3
131,918 - Atu6110 0.60 -0.8
131,963 - Atu6110 0.65 -1.1
131,981 + Atu6110 0.67 +0.8
132,020 + Atu6110 0.71 +0.4
132,022 + Atu6110 0.71 +0.4
132,028 - Atu6110 0.72 -0.0
132,079 + Atu6110 0.78 +0.5
132,097 - Atu6110 0.80 +1.5
132,097 - Atu6110 0.80 -0.3
132,097 - Atu6110 0.80 +0.4
132,102 - Atu6110 0.80 -0.0
132,102 - Atu6110 0.80 -0.0
132,112 - Atu6110 0.81 +0.1
132,123 + Atu6110 0.82 +0.7
132,163 - Atu6110 0.87 +0.2
132,199 + -0.3
132,213 + -0.1
132,246 + -0.3
132,254 - -0.4
132,372 - -1.9
132,558 - Atu6111 0.30 +1.0
132,623 + Atu6111 0.37 +0.1
132,672 - Atu6111 0.42 +0.0
132,698 - Atu6111 0.45 +0.4
132,698 - Atu6111 0.45 -0.1
132,731 - Atu6111 0.49 +0.0
132,738 + Atu6111 0.49 +0.2
132,858 + Atu6111 0.63 -0.4
132,877 - Atu6111 0.65 +0.2
132,920 - Atu6111 0.69 +0.1
132,920 - Atu6111 0.69 +1.7
132,977 - Atu6111 0.76 -0.1
133,044 + Atu6111 0.83 -0.1
133,047 - Atu6111 0.83 -1.2
133,057 - Atu6111 0.84 +0.2
133,120 - -0.3
133,125 - -0.1
133,209 + +0.4
133,284 + +0.0
133,323 + +0.1
133,393 - +0.3
133,407 + +0.6
133,514 + +1.2
133,527 + -0.4
133,527 + -0.2
133,559 + +1.1
133,596 - +0.0
133,650 + Atu6112 0.14 -0.0
133,673 - Atu6112 0.17 +0.5
133,704 - Atu6112 0.22 -1.0
133,829 + Atu6112 0.41 -0.9
133,830 + Atu6112 0.41 -1.5
134,068 - Atu6112 0.78 +0.4
134,124 + Atu6112 0.86 -0.4
134,145 - Atu6112 0.90 -0.8
134,154 - -1.5

Or see this region's nucleotide sequence