Strain Fitness in Agrobacterium fabrum C58 around Atu5105

Experiment: Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Cocuture=C58C1OD2.0

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Cocuture=C58C1OD2.0
110,846	+				-0.7
110,856	+				-0.8
110,856	+				-0.8
110,856	+				-1.0
110,864	-				-0.8
110,864	-				-1.6
110,888	+				-0.0
110,957	+				+0.0
110,957	+				+0.6
110,957	+				-1.7
110,965	-				-0.2
110,965	-				-0.9
110,965	-				-0.7
111,033	-				+0.2
111,182	+				-0.4
111,368	-		Atu5104	0.27	-0.8
111,408	-		Atu5104	0.35	+0.2
111,425	-		Atu5104	0.38	-1.1
111,450	-		Atu5104	0.42	-0.1
111,481	+		Atu5104	0.48	-0.2
111,508	-		Atu5104	0.53	-0.7
111,510	+		Atu5104	0.53	-0.3
111,518	-		Atu5104	0.55	-0.5
111,534	+		Atu5104	0.58	-1.1
111,566	+		Atu5104	0.64	-0.9
111,698	-		Atu5104	0.88	-0.3
111,723	+				-1.3
111,769	+				-1.1
111,770	-				-1.1
111,803	-				-0.3
111,806	+				-0.0
111,867	+		Atu5105	0.24	-0.8
111,872	+		Atu5105	0.25	-0.3
111,880	-		Atu5105	0.26	-2.3
111,885	-		Atu5105	0.28	-0.3
112,067	+		Atu5105	0.69	-1.3
112,081	-		Atu5105	0.72	-1.7
112,084	-		Atu5105	0.73	-0.9
112,143	-		Atu5105	0.87	-1.0
112,157	-		Atu5105	0.90	-0.7
112,184	-				-1.0
112,216	+				-0.4
112,304	+				-1.1
112,363	+				-0.3
112,501	+		Atu5106	0.46	-0.8
112,517	-		Atu5106	0.53	-0.1
112,559	-		Atu5106	0.71	-0.4
112,702	-				-0.6
112,780	-		Atu5107	0.24	-0.5
112,858	-		Atu5107	0.49	-1.1
112,891	+		Atu5107	0.59	-1.3
112,982	-		Atu5107	0.88	-0.3
113,018	-				+0.8
113,074	-				-2.3
113,130	-				-0.6
113,155	+				-0.6
113,183	+				-1.3
113,188	+				-0.7
113,199	-				-1.0