Strain Fitness in Agrobacterium fabrum C58 around Atu5100

Experiment: Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Cocuture=C58C1OD2.0

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Cocuture=C58C1OD2.0
103,742	+		Atu5099	0.36	-0.3
103,762	+		Atu5099	0.37	-0.5
103,770	-		Atu5099	0.38	+0.3
103,849	+		Atu5099	0.44	-0.7
103,857	-		Atu5099	0.44	-0.5
103,857	-		Atu5099	0.44	-0.7
103,876	+		Atu5099	0.46	+1.3
103,974	-		Atu5099	0.52	-2.1
103,976	+		Atu5099	0.53	-0.5
103,981	+		Atu5099	0.53	+0.1
103,981	+		Atu5099	0.53	-0.8
104,011	+		Atu5099	0.55	-0.7
104,125	+		Atu5099	0.63	+0.4
104,163	-		Atu5099	0.66	-0.3
104,176	+		Atu5099	0.67	-0.5
104,181	+		Atu5099	0.67	+0.2
104,184	-		Atu5099	0.67	+1.3
104,186	+		Atu5099	0.67	+0.6
104,189	-		Atu5099	0.68	-0.4
104,191	+		Atu5099	0.68	+0.2
104,196	+		Atu5099	0.68	-0.5
104,258	-		Atu5099	0.72	-0.4
104,303	+		Atu5099	0.76	-0.2
104,332	-		Atu5099	0.78	+0.5
104,352	-		Atu5099	0.79	-0.0
104,377	+		Atu5099	0.81	-0.7
104,382	+		Atu5099	0.81	-0.5
104,416	+		Atu5099	0.84	+0.6
104,424	-		Atu5099	0.84	+0.4
104,458	-		Atu5099	0.87	-0.7
104,677	+				-1.0
104,722	-				+0.0
104,731	+				-1.1
104,784	-				-0.0
104,795	+				-1.3
104,795	+				-0.2
104,795	+				+0.2
104,803	-				-1.2
104,836	-				-0.9
104,962	+				-0.5
105,031	+		Atu5100	0.12	-0.7
105,163	+		Atu5100	0.16	-1.1
105,226	-		Atu5100	0.18	+0.4
105,227	+		Atu5100	0.18	-2.3
105,296	-		Atu5100	0.20	-0.4
105,521	+		Atu5100	0.27	-0.4
105,521	+		Atu5100	0.27	-1.6
105,521	+		Atu5100	0.27	-0.1
105,523	+		Atu5100	0.27	-1.0
105,529	-		Atu5100	0.27	-0.2
105,529	-		Atu5100	0.27	-1.1
105,543	+		Atu5100	0.28	-0.8
105,592	+		Atu5100	0.29	-0.8
105,600	-		Atu5100	0.29	-0.4
105,617	+		Atu5100	0.30	+0.8
105,637	+		Atu5100	0.30	+0.3
105,645	-		Atu5100	0.31	-0.3
105,663	-		Atu5100	0.31	-0.9
105,669	+		Atu5100	0.31	-0.4
105,677	-		Atu5100	0.32	+0.1
105,796	+		Atu5100	0.35	-1.7
105,817	+		Atu5100	0.36	-1.2
105,834	+		Atu5100	0.36	-0.3
105,842	-		Atu5100	0.37	+0.6
105,862	+		Atu5100	0.37	-0.5
105,867	+		Atu5100	0.38	+0.1
105,899	+		Atu5100	0.38	-0.5
105,906	-		Atu5100	0.39	-0.5
105,934	+		Atu5100	0.40	-0.1
105,942	-		Atu5100	0.40	-0.3
105,955	+		Atu5100	0.40	-0.1
106,034	-		Atu5100	0.43	-0.3
106,086	+		Atu5100	0.44	+1.2
106,150	-		Atu5100	0.46	-0.7
106,226	+		Atu5100	0.49	-2.4
106,231	+		Atu5100	0.49	-0.7
106,240	+		Atu5100	0.49	-0.7
106,276	-		Atu5100	0.50	-0.4
106,320	+		Atu5100	0.51	-0.3
106,415	+		Atu5100	0.54	-0.5
106,435	+		Atu5100	0.55	-0.2
106,455	+		Atu5100	0.56	-0.7
106,475	+		Atu5100	0.56	-0.4
106,479	+		Atu5100	0.56	-0.4
106,542	-		Atu5100	0.58	-0.9
106,598	+		Atu5100	0.60	-0.4
106,598	+		Atu5100	0.60	+0.1
106,606	-		Atu5100	0.60	-0.9
106,606	-		Atu5100	0.60	+0.2
106,606	-		Atu5100	0.60	+0.0
106,608	+		Atu5100	0.60	-2.5
106,608	+		Atu5100	0.60	-1.0
106,608	+		Atu5100	0.60	-0.6
106,616	-		Atu5100	0.60	+0.1
106,616	-		Atu5100	0.60	-1.0
106,616	-		Atu5100	0.60	-1.2
106,770	-		Atu5100	0.65	+1.1
106,809	+		Atu5100	0.66	-0.3
106,862	-		Atu5100	0.68	-0.7
106,877	+		Atu5100	0.69	+0.7
106,879	+		Atu5100	0.69	-2.3
106,882	-		Atu5100	0.69	-1.4
106,918	+		Atu5100	0.70	-0.2
106,942	-		Atu5100	0.71	-0.7
106,944	-		Atu5100	0.71	-1.2
107,001	+		Atu5100	0.72	-0.4
107,001	+		Atu5100	0.72	-0.7
107,001	+		Atu5100	0.72	-0.8
107,009	-		Atu5100	0.73	-1.2
107,047	+		Atu5100	0.74	-0.5
107,055	-		Atu5100	0.74	+0.8
107,210	-		Atu5100	0.79	-0.5
107,224	-		Atu5100	0.79	-1.5
107,293	+		Atu5100	0.81	-0.1
107,333	-		Atu5100	0.83	-0.3
107,378	+		Atu5100	0.84	-1.6
107,444	-		Atu5100	0.86	+0.4
107,448	+		Atu5100	0.86	-0.5
107,482	+		Atu5100	0.87	-0.2
107,482	+		Atu5100	0.87	-0.7
107,482	+		Atu5100	0.87	+0.2
107,490	-		Atu5100	0.87	-0.8
107,490	-		Atu5100	0.87	-0.7
107,490	-		Atu5100	0.87	-1.2
107,490	-		Atu5100	0.87	-0.6
107,525	-		Atu5100	0.88	-0.2
107,527	+		Atu5100	0.88	-0.6
107,543	-		Atu5100	0.89	+0.6
107,550	-		Atu5100	0.89	+0.4
107,608	+				-0.4
107,616	-				-1.8
107,631	-				-0.7
107,678	-				-0.3
107,756	-				-0.6
107,826	-				+0.3
107,845	+				-0.2
107,845	+				-0.6
107,845	+				-0.9
107,914	+				-1.1
107,972	+				-1.3
107,972	+				-0.4
108,044	-		Atu5101	0.18	-0.8
108,047	+		Atu5101	0.19	+0.5
108,059	+		Atu5101	0.23	-0.2
108,062	+		Atu5101	0.24	+2.8
108,064	+		Atu5101	0.25	-0.8
108,088	+		Atu5101	0.33	-0.8
108,098	+		Atu5101	0.36	-0.8
108,106	-		Atu5101	0.39	-2.0
108,131	+		Atu5101	0.48	-1.3
108,217	-		Atu5101	0.78	-0.9
108,319	+				-2.5
108,362	+				-0.6
108,439	-				-0.5
108,465	+				-1.3
108,491	-				-0.3
108,491	-				-0.3
108,520	+				-1.3
108,544	+				-0.5
108,576	+				-0.1
108,576	+				-0.5
108,584	-				-0.5
108,584	-				-0.9
108,596	-				-0.3
108,599	-				-0.3
108,599	-				-1.4
108,679	-				+1.4
108,679	-				-0.6
108,785	+				-0.5
108,801	+				-1.3
108,801	+				-0.4
108,809	-				-1.1
108,850	-				-0.7
108,885	+				-1.0