Strain Fitness in Agrobacterium fabrum C58 around Atu5090

Experiment: Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Cocuture=C58C1OD2.0

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Cocuture=C58C1OD2.0
92,286	-		Atu5089	0.12	+0.5
92,398	+		Atu5089	0.22	-0.3
92,425	-		Atu5089	0.25	-0.1
92,457	+		Atu5089	0.28	-2.3
92,465	-		Atu5089	0.28	-0.2
92,470	-		Atu5089	0.29	-0.6
92,530	-		Atu5089	0.34	+0.6
92,606	+		Atu5089	0.41	-0.8
92,680	+		Atu5089	0.48	-0.5
92,739	+		Atu5089	0.53	-0.1
92,761	-		Atu5089	0.55	-0.7
92,786	+		Atu5089	0.57	-0.5
92,806	-		Atu5089	0.59	+0.6
92,816	-		Atu5089	0.60	-0.3
92,816	-		Atu5089	0.60	+0.1
92,840	-		Atu5089	0.62	-0.3
92,863	-		Atu5089	0.64	-0.3
92,890	+		Atu5089	0.66	-0.5
92,915	+		Atu5089	0.69	+0.1
92,950	+		Atu5089	0.72	-0.3
93,012	-		Atu5089	0.77	-1.0
93,049	-		Atu5089	0.81	+0.9
93,057	+		Atu5089	0.81	-0.8
93,057	+		Atu5089	0.81	-0.3
93,057	+		Atu5089	0.81	-0.3
93,064	+		Atu5089	0.82	-0.8
93,065	-		Atu5089	0.82	-0.3
93,077	+		Atu5089	0.83	+0.4
93,088	-		Atu5089	0.84	-1.0
93,155	-				-0.8
93,172	-				+0.2
93,200	+				-0.4
93,205	-				+0.0
93,381	+				-0.3
93,389	-				+0.4
93,437	+				+0.3
93,437	+				-0.1
93,445	-				-0.1
93,445	-				-0.2
93,558	+		Atu5090	0.14	-0.3
93,560	+		Atu5090	0.14	-0.3
93,636	+		Atu5090	0.18	+0.0
93,636	+		Atu5090	0.18	-0.8
93,641	+		Atu5090	0.18	+1.2
93,641	+		Atu5090	0.18	-0.9
93,649	-		Atu5090	0.19	-0.3
93,679	-		Atu5090	0.20	+1.2
93,681	+		Atu5090	0.20	-0.0
93,689	-		Atu5090	0.21	-0.4
93,689	-		Atu5090	0.21	+0.1
93,689	-		Atu5090	0.21	+0.5
93,693	+		Atu5090	0.21	-0.2
93,717	-		Atu5090	0.22	-0.5
93,797	+		Atu5090	0.26	-0.8
93,852	+		Atu5090	0.29	-0.6
93,852	+		Atu5090	0.29	-0.5
93,852	-		Atu5090	0.29	-1.0
93,852	-		Atu5090	0.29	-1.0
93,953	-		Atu5090	0.34	-0.4
94,035	+		Atu5090	0.38	-0.2
94,210	+		Atu5090	0.47	-1.1
94,269	-		Atu5090	0.50	-0.7
94,289	+		Atu5090	0.51	-1.9
94,315	-		Atu5090	0.53	-0.0
94,315	-		Atu5090	0.53	+0.0
94,352	+		Atu5090	0.54	-0.5
94,359	+		Atu5090	0.55	-0.4
94,367	-		Atu5090	0.55	-0.0
94,376	+		Atu5090	0.56	-0.3
94,384	-		Atu5090	0.56	+0.2
94,384	-		Atu5090	0.56	-0.4
94,438	-		Atu5090	0.59	+0.1
94,491	+		Atu5090	0.61	-0.6
94,493	-		Atu5090	0.62	+0.1
94,506	+		Atu5090	0.62	+0.2
94,511	+		Atu5090	0.62	+0.5
94,528	+		Atu5090	0.63	-0.5
94,548	+		Atu5090	0.64	-0.8
94,548	+		Atu5090	0.64	-0.4
94,590	-		Atu5090	0.66	-0.1
94,631	+		Atu5090	0.69	-0.1
94,646	-		Atu5090	0.69	-0.5
94,646	-		Atu5090	0.69	-0.4
94,646	-		Atu5090	0.69	-0.2
94,689	-		Atu5090	0.71	-0.2
94,732	+		Atu5090	0.74	-2.7
94,750	-		Atu5090	0.75	-0.8
94,847	+		Atu5090	0.79	-0.1
94,847	+		Atu5090	0.79	+0.6
94,857	+		Atu5090	0.80	-0.5
94,904	+		Atu5090	0.82	-0.3
94,967	-		Atu5090	0.86	-0.2
94,972	-		Atu5090	0.86	-0.4
95,033	+		Atu5090	0.89	+0.1
95,042	+		Atu5090	0.89	-1.5
95,068	+				-0.5
95,069	+				-2.5
95,109	-				+0.5
95,154	-				-0.6
95,193	+				+0.2
95,345	+				-1.7
95,502	-		Atu5091	0.21	-0.6
95,568	-		Atu5091	0.26	+0.5
95,588	+		Atu5091	0.28	+1.9
95,593	+		Atu5091	0.28	-0.3
95,593	+		Atu5091	0.28	+0.0
95,601	-		Atu5091	0.29	-0.6
95,603	+		Atu5091	0.29	-0.1
95,611	-		Atu5091	0.30	-0.1
95,611	-		Atu5091	0.30	+2.1
95,649	+		Atu5091	0.33	+0.2
95,811	-		Atu5091	0.47	-0.7
95,811	-		Atu5091	0.47	+0.1
95,811	-		Atu5091	0.47	+0.2
95,886	+		Atu5091	0.53	-0.1
95,951	+		Atu5091	0.58	+1.7
95,959	-		Atu5091	0.59	-0.3
95,991	-		Atu5091	0.62	-2.2
96,013	-		Atu5091	0.63	-0.8
96,036	-		Atu5091	0.65	+0.1
96,098	+		Atu5091	0.71	-0.0
96,104	-		Atu5091	0.71	-0.6
96,127	-		Atu5091	0.73	+0.3
96,241	+		Atu5091	0.83	+0.1
96,246	-		Atu5091	0.83	-0.4