Strain Fitness in Agrobacterium fabrum C58 around Atu4707

Experiment: Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Cocuture=C58C1OD2.0

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Cocuture=C58C1OD2.0
1,867,257	-				+0.8
1,867,257	-				-0.0
1,867,475	+		Atu4706	0.31	-0.2
1,867,639	+		Atu4706	0.66	+1.2
1,867,650	+		Atu4706	0.68	+0.2
1,867,705	-		Atu4706	0.79	+0.0
1,867,746	-		Atu4706	0.88	+0.1
1,867,884	-				+0.3
1,867,942	+				+0.1
1,867,998	+		Atu4707	0.13	+0.3
1,868,065	+		Atu4707	0.17	+0.1
1,868,065	+		Atu4707	0.17	+1.2
1,868,065	+		Atu4707	0.17	+0.3
1,868,131	+		Atu4707	0.21	-0.1
1,868,164	-		Atu4707	0.23	+1.6
1,868,211	-		Atu4707	0.26	-0.1
1,868,306	+		Atu4707	0.32	-1.2
1,868,405	+		Atu4707	0.39	+0.1
1,868,542	+		Atu4707	0.48	+0.8
1,868,633	-		Atu4707	0.54	+0.9
1,868,633	-		Atu4707	0.54	+0.4
1,868,759	-		Atu4707	0.62	+1.1
1,869,136	-		Atu4707	0.86	+0.4
1,869,226	-				+0.1
1,869,283	+				-0.4
1,869,337	+				+0.7
1,869,351	+				+0.5
1,869,359	-				+0.5
1,869,442	-				-0.2
1,869,594	+				-0.0
1,869,602	-				+0.5
1,869,609	+				+1.0
1,869,620	+				-0.5
1,869,674	-		Atu4708	0.11	+0.6
1,869,705	-		Atu4708	0.12	-0.4
1,869,706	+		Atu4708	0.12	-0.1
1,869,744	+		Atu4708	0.13	+0.9
1,869,878	+		Atu4708	0.18	-0.0
1,869,901	+		Atu4708	0.19	+0.7
1,869,937	+		Atu4708	0.20	+0.3
1,870,063	-		Atu4708	0.24	+1.3
1,870,177	+		Atu4708	0.28	-0.4
1,870,185	-		Atu4708	0.29	-0.1
1,870,350	-		Atu4708	0.34	-0.6