Strain Fitness in Agrobacterium fabrum C58 around Atu4254

Experiment: Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Cocuture=C58C1OD2.0

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Cocuture=C58C1OD2.0
1,378,204	-		Atu4253	0.47	+0.1
1,378,204	-		Atu4253	0.47	+0.8
1,378,204	-		Atu4253	0.47	+0.8
1,378,223	-		Atu4253	0.48	-0.4
1,378,283	+		Atu4253	0.52	+0.4
1,378,306	-		Atu4253	0.53	-0.6
1,378,363	-		Atu4253	0.57	-0.1
1,378,422	+		Atu4253	0.61	-0.6
1,378,502	+		Atu4253	0.65	+0.5
1,378,552	-		Atu4253	0.69	+0.5
1,378,563	+		Atu4253	0.69	-0.9
1,378,610	+		Atu4253	0.72	+0.1
1,378,612	+		Atu4253	0.72	+0.3
1,378,663	+		Atu4253	0.75	+0.1
1,378,663	+		Atu4253	0.75	-0.6
1,378,672	-		Atu4253	0.76	+1.7
1,378,708	-		Atu4253	0.78	-0.6
1,378,883	+		Atu4253	0.89	+3.0
1,378,886	+		Atu4253	0.89	-0.2
1,378,899	-				-0.1
1,378,901	-				+0.5
1,378,961	+				+1.2
1,378,961	+				+1.0
1,378,961	+				-0.6
1,378,961	+				+0.4
1,378,964	-				-0.5
1,378,964	-				+1.1
1,378,964	-				+0.2
1,378,969	-				-0.3
1,378,988	-				-0.9
1,378,993	-				-0.3
1,379,150	-				-0.3
1,379,189	-		Atu4254	0.12	+2.3
1,379,194	-		Atu4254	0.13	+0.3
1,379,261	-		Atu4254	0.19	+1.1
1,379,261	-		Atu4254	0.19	-0.3
1,379,283	-		Atu4254	0.21	+0.5
1,379,283	-		Atu4254	0.21	+0.0
1,379,283	-		Atu4254	0.21	+0.2
1,379,283	-		Atu4254	0.21	+0.4
1,379,444	-		Atu4254	0.36	+0.4
1,379,444	-		Atu4254	0.36	+0.4
1,379,693	-		Atu4254	0.60	-0.3
1,379,712	+		Atu4254	0.62	+1.7
1,380,059	-				+0.3
1,380,217	-				-0.1
1,380,217	-				+0.8
1,380,257	+				+0.6
1,380,280	-				+0.0
1,380,280	-				-0.1
1,380,293	+				-0.2
1,380,316	+				-0.7
1,380,324	-				+0.4
1,380,409	-		Atu4255	0.11	+1.1
1,380,418	-		Atu4255	0.13	-0.4
1,380,425	+		Atu4255	0.14	-0.3
1,380,436	+		Atu4255	0.16	+0.0
1,380,436	+		Atu4255	0.16	+0.1
1,380,436	+		Atu4255	0.16	-1.6
1,380,444	-		Atu4255	0.18	-0.0
1,380,545	+		Atu4255	0.37	+0.0
1,380,550	+		Atu4255	0.38	+1.0
1,380,739	-		Atu4255	0.74	+0.1
1,380,787	+		Atu4255	0.83	-0.0
1,380,860	-				+0.5
1,380,994	+				+0.2
1,381,002	-				+0.4