Strain Fitness in Agrobacterium fabrum C58 around Atu2020

Experiment: Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Cocuture=C58C1OD2.0

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Cocuture=C58C1OD2.0
1,981,065	-				-1.3
1,981,079	+				-0.8
1,981,082	-				-0.3
1,981,291	-		Atu2020	0.35	-0.4
1,981,386	-		Atu2020	0.50	+0.1
1,981,407	-		Atu2020	0.53	+0.9
1,981,589	-		Atu2020	0.81	+0.3
1,981,732	-				-1.0
1,981,790	-				-0.3
1,981,862	+				-0.3
1,981,862	+				+0.3
1,981,870	-				-1.8
1,981,880	-				+0.5
1,981,945	-				-0.1
1,982,001	+				-0.2
1,982,026	-				-1.5
1,982,055	+				+0.0
1,982,055	+				+0.1
1,982,090	-				-0.3
1,982,396	-		Atu2021	0.31	+0.7
1,982,611	-		Atu2021	0.55	+0.0
1,982,613	+		Atu2021	0.55	-0.2
1,982,621	-		Atu2021	0.56	+0.0