Strain Fitness in Agrobacterium fabrum C58 around Atu1426

Experiment: Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Cocuture=C58C1OD2.0

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Cocuture=C58C1OD2.0
1,421,448	+				+0.5
1,421,448	+				-0.3
1,421,456	-				+0.2
1,421,456	-				+0.1
1,421,456	-				+0.0
1,421,456	-				+0.2
1,421,456	-				-0.1
1,421,456	-				+0.3
1,422,371	+		Atu1426	0.61	-2.2
1,422,744	+				-0.0
1,422,921	+		Atu1427	0.24	+0.3
1,422,921	+		Atu1427	0.24	-0.7
1,422,947	+		Atu1427	0.39	+0.8
1,422,947	+		Atu1427	0.39	+0.1
1,423,037	-		Atu1427	0.89	-0.1
1,423,051	+				-0.3
1,423,059	-				-0.3
1,423,145	+				-1.4