Strain Fitness in Agrobacterium fabrum C58 around Atu1307

Experiment: Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Cocuture=C58C1OD2.0

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Cocuture=C58C1OD2.0
1,298,136	-		Atu1305	0.85	-0.0
1,298,181	+		Atu1305	0.89	-0.2
1,298,190	+		Atu1305	0.90	+0.1
1,298,248	+				+1.5
1,298,306	+				-0.2
1,298,317	-				+0.4
1,298,335	-				-0.7
1,298,965	-				-0.0
1,298,970	-				+1.3
1,298,991	-				-1.3
1,299,041	+				-2.8
1,299,153	-		Atu1307	0.12	-4.2
1,299,163	+		Atu1307	0.13	-3.3
1,299,452	+		Atu1307	0.35	-3.1
1,299,628	-		Atu1307	0.49	-4.8
1,299,628	-		Atu1307	0.49	-4.6
1,299,891	-		Atu1307	0.69	-1.8
1,300,124	-		Atu1307	0.87	-4.6
1,300,165	-				-4.3
1,300,271	-				-3.5
1,300,286	-				-3.4
1,300,290	-				-0.4
1,300,305	-				-0.3
1,300,305	-				+0.4
1,300,537	-		Atu1308	0.27	-4.5
1,300,539	-		Atu1308	0.27	-3.9
1,300,709	-		Atu1308	0.45	-2.6
1,300,732	-		Atu1308	0.47	-5.7
1,300,745	-		Atu1308	0.49	-4.4
1,300,814	-		Atu1308	0.56	-4.5
1,301,005	+		Atu1308	0.76	-3.4
1,301,288	-				-0.6