Experiment: Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Cocuture=C58C1OD2.0
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0893 and Atu0894 overlap by 8 nucleotides Atu0894 and Atu0895 are separated by 241 nucleotides
Atu0893: Atu0893 - ABC transporter, nucleotide binding/ATPase protein, at 883,625 to 884,722
Atu0893
Atu0894: Atu0894 - ABC transporter, membrane spanning protein, at 884,715 to 885,623
Atu0894
Atu0895: Atu0895 - ABC transporter, substrate binding protein, at 885,865 to 886,875
Atu0895
Position (kb) 884
885
886 Strain fitness (log2 ratio) -1
0
1
2 at 883.718 kb on - strand at 883.819 kb on - strand, within Atu0893 at 883.845 kb on + strand, within Atu0893 at 883.853 kb on - strand, within Atu0893 at 883.977 kb on - strand, within Atu0893 at 884.040 kb on + strand, within Atu0893 at 884.119 kb on - strand, within Atu0893 at 884.188 kb on + strand, within Atu0893 at 884.257 kb on + strand, within Atu0893 at 884.257 kb on + strand, within Atu0893 at 884.319 kb on + strand, within Atu0893 at 884.398 kb on - strand, within Atu0893 at 884.587 kb on - strand, within Atu0893 at 884.595 kb on - strand, within Atu0893 at 884.599 kb on + strand, within Atu0893 at 884.607 kb on - strand, within Atu0893 at 884.607 kb on - strand, within Atu0893 at 884.623 kb on + strand at 884.623 kb on + strand at 884.629 kb on - strand at 884.720 kb on - strand at 884.801 kb on + strand at 884.809 kb on - strand, within Atu0894 at 884.893 kb on - strand, within Atu0894 at 884.952 kb on + strand, within Atu0894 at 885.098 kb on - strand, within Atu0894 at 885.122 kb on - strand, within Atu0894 at 885.171 kb on + strand, within Atu0894 at 885.502 kb on + strand, within Atu0894 at 885.568 kb on - strand at 885.607 kb on + strand at 885.669 kb on - strand at 885.683 kb on - strand at 885.684 kb on + strand at 885.775 kb on + strand at 885.806 kb on - strand at 885.829 kb on - strand at 885.996 kb on - strand, within Atu0895 at 886.002 kb on - strand, within Atu0895 at 886.191 kb on + strand, within Atu0895 at 886.345 kb on - strand, within Atu0895 at 886.346 kb on + strand, within Atu0895 at 886.559 kb on + strand, within Atu0895
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Cocuture=C58C1OD2.0 remove 883,718 - -1.5 883,819 - Atu0893 0.18 +1.9 883,845 + Atu0893 0.20 +1.7 883,853 - Atu0893 0.21 -0.6 883,977 - Atu0893 0.32 -0.6 884,040 + Atu0893 0.38 +0.1 884,119 - Atu0893 0.45 -0.9 884,188 + Atu0893 0.51 +0.7 884,257 + Atu0893 0.58 +1.7 884,257 + Atu0893 0.58 -0.3 884,319 + Atu0893 0.63 -0.3 884,398 - Atu0893 0.70 +0.5 884,587 - Atu0893 0.88 +0.7 884,595 - Atu0893 0.88 -1.6 884,599 + Atu0893 0.89 -1.5 884,607 - Atu0893 0.89 +0.9 884,607 - Atu0893 0.89 +0.9 884,623 + +1.1 884,623 + -0.6 884,629 - +0.7 884,720 - -0.3 884,801 + +0.7 884,809 - Atu0894 0.10 -0.1 884,893 - Atu0894 0.20 +1.7 884,952 + Atu0894 0.26 +0.7 885,098 - Atu0894 0.42 +0.7 885,122 - Atu0894 0.45 -0.6 885,171 + Atu0894 0.50 +0.1 885,502 + Atu0894 0.87 +0.4 885,568 - +1.1 885,607 + -0.6 885,669 - -0.1 885,683 - -0.5 885,684 + +1.0 885,775 + -0.3 885,806 - -0.0 885,829 - +0.6 885,996 - Atu0895 0.13 -0.3 886,002 - Atu0895 0.14 -0.3 886,191 + Atu0895 0.32 +0.3 886,345 - Atu0895 0.47 +0.1 886,346 + Atu0895 0.48 +1.3 886,559 + Atu0895 0.69 -0.0
Or see this region's nucleotide sequence