Experiment: Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Cocuture=C58C1OD2.0
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0697 and Atu0698 overlap by 4 nucleotides Atu0698 and Atu0699 are separated by 152 nucleotides Atu0699 and Atu0700 are separated by 360 nucleotides
Atu0697: Atu0697 - tetraacyldisaccharide 4'-kinase, at 695,709 to 696,755
Atu0697
Atu0698: Atu0698 - hypothetical protein, at 696,752 to 696,985
Atu0698
Atu0699: Atu0699 - DNA mismatch repair protein MutL, at 697,138 to 698,958
Atu0699
Atu0700: Atu0700 - two component sensor kinase, at 699,319 to 700,986
Atu0700
Position (kb) 697
698
699 Strain fitness (log2 ratio) -2
-1
0
1
2 at 696.763 kb on - strand at 696.819 kb on + strand, within Atu0698 at 696.827 kb on - strand, within Atu0698 at 696.896 kb on - strand, within Atu0698 at 696.896 kb on - strand, within Atu0698 at 696.908 kb on + strand, within Atu0698 at 697.022 kb on - strand at 697.062 kb on + strand at 697.099 kb on - strand at 697.104 kb on - strand at 697.104 kb on - strand at 697.134 kb on + strand at 697.220 kb on - strand at 697.311 kb on - strand at 697.425 kb on + strand, within Atu0699 at 697.738 kb on + strand, within Atu0699 at 697.785 kb on + strand, within Atu0699 at 697.899 kb on + strand, within Atu0699 at 697.907 kb on - strand, within Atu0699 at 697.922 kb on - strand, within Atu0699 at 697.970 kb on - strand, within Atu0699 at 697.992 kb on - strand, within Atu0699 at 698.085 kb on + strand, within Atu0699 at 698.148 kb on - strand, within Atu0699 at 698.211 kb on - strand, within Atu0699 at 698.236 kb on + strand, within Atu0699 at 698.243 kb on - strand, within Atu0699 at 698.317 kb on - strand, within Atu0699 at 698.319 kb on - strand, within Atu0699 at 698.393 kb on + strand, within Atu0699 at 698.568 kb on + strand, within Atu0699 at 698.605 kb on + strand, within Atu0699 at 698.610 kb on + strand, within Atu0699 at 698.618 kb on - strand, within Atu0699 at 698.633 kb on - strand, within Atu0699 at 698.665 kb on + strand, within Atu0699 at 698.666 kb on - strand, within Atu0699 at 698.738 kb on + strand, within Atu0699 at 698.760 kb on - strand, within Atu0699 at 698.772 kb on + strand, within Atu0699 at 698.805 kb on - strand at 698.813 kb on - strand at 698.892 kb on + strand at 699.067 kb on + strand at 699.076 kb on + strand at 699.105 kb on - strand at 699.107 kb on + strand at 699.178 kb on - strand at 699.202 kb on - strand at 699.207 kb on - strand at 699.272 kb on - strand at 699.272 kb on - strand at 699.286 kb on + strand at 699.292 kb on + strand at 699.341 kb on + strand at 699.386 kb on - strand at 699.451 kb on - strand at 699.538 kb on - strand, within Atu0700 at 699.554 kb on - strand, within Atu0700 at 699.558 kb on + strand, within Atu0700 at 699.615 kb on + strand, within Atu0700 at 699.620 kb on + strand, within Atu0700 at 699.648 kb on + strand, within Atu0700 at 699.648 kb on + strand, within Atu0700 at 699.648 kb on + strand, within Atu0700 at 699.648 kb on + strand, within Atu0700 at 699.648 kb on + strand, within Atu0700 at 699.655 kb on + strand, within Atu0700 at 699.656 kb on - strand, within Atu0700 at 699.656 kb on - strand, within Atu0700 at 699.656 kb on - strand, within Atu0700 at 699.656 kb on - strand, within Atu0700 at 699.656 kb on - strand, within Atu0700 at 699.676 kb on + strand, within Atu0700 at 699.684 kb on - strand, within Atu0700 at 699.756 kb on - strand, within Atu0700 at 699.773 kb on - strand, within Atu0700 at 699.877 kb on + strand, within Atu0700
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Cocuture=C58C1OD2.0 remove 696,763 - -2.2 696,819 + Atu0698 0.29 +0.2 696,827 - Atu0698 0.32 +0.2 696,896 - Atu0698 0.62 +0.1 696,896 - Atu0698 0.62 +0.6 696,908 + Atu0698 0.67 -0.5 697,022 - -1.1 697,062 + -0.1 697,099 - +0.3 697,104 - -0.9 697,104 - -0.3 697,134 + -0.9 697,220 - +0.2 697,311 - -0.5 697,425 + Atu0699 0.16 -0.5 697,738 + Atu0699 0.33 +0.2 697,785 + Atu0699 0.36 -0.5 697,899 + Atu0699 0.42 +0.6 697,907 - Atu0699 0.42 +0.2 697,922 - Atu0699 0.43 -0.3 697,970 - Atu0699 0.46 -1.6 697,992 - Atu0699 0.47 -1.1 698,085 + Atu0699 0.52 -0.3 698,148 - Atu0699 0.55 -0.4 698,211 - Atu0699 0.59 +0.3 698,236 + Atu0699 0.60 +0.1 698,243 - Atu0699 0.61 +0.6 698,317 - Atu0699 0.65 -1.8 698,319 - Atu0699 0.65 -0.4 698,393 + Atu0699 0.69 -0.4 698,568 + Atu0699 0.79 -0.4 698,605 + Atu0699 0.81 -1.3 698,610 + Atu0699 0.81 -0.2 698,618 - Atu0699 0.81 -1.0 698,633 - Atu0699 0.82 -0.6 698,665 + Atu0699 0.84 -0.2 698,666 - Atu0699 0.84 -0.5 698,738 + Atu0699 0.88 -0.7 698,760 - Atu0699 0.89 -1.6 698,772 + Atu0699 0.90 -0.6 698,805 - -0.3 698,813 - +0.8 698,892 + +0.4 699,067 + +0.5 699,076 + +0.4 699,105 - +0.0 699,107 + +0.2 699,178 - +0.9 699,202 - -0.2 699,207 - -0.3 699,272 - +0.5 699,272 - +0.3 699,286 + -0.1 699,292 + +0.3 699,341 + -0.5 699,386 - +0.1 699,451 - +0.3 699,538 - Atu0700 0.13 +0.2 699,554 - Atu0700 0.14 -0.2 699,558 + Atu0700 0.14 +1.2 699,615 + Atu0700 0.18 +0.0 699,620 + Atu0700 0.18 -1.6 699,648 + Atu0700 0.20 +0.4 699,648 + Atu0700 0.20 +0.3 699,648 + Atu0700 0.20 -0.3 699,648 + Atu0700 0.20 +0.4 699,648 + Atu0700 0.20 +0.1 699,655 + Atu0700 0.20 -0.4 699,656 - Atu0700 0.20 +0.7 699,656 - Atu0700 0.20 +0.0 699,656 - Atu0700 0.20 +0.2 699,656 - Atu0700 0.20 +0.7 699,656 - Atu0700 0.20 +0.6 699,676 + Atu0700 0.21 +0.1 699,684 - Atu0700 0.22 -0.3 699,756 - Atu0700 0.26 -0.1 699,773 - Atu0700 0.27 -0.2 699,877 + Atu0700 0.33 +2.0
Or see this region's nucleotide sequence