Experiment: Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Cocuture=C58C1OD2.0
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3609 and Atu3610 overlap by 28 nucleotides Atu3610 and Atu8095 are separated by 49 nucleotides Atu8095 and Atu3611 are separated by 171 nucleotides
Atu3609: Atu3609 - 1-acyl-sn-glycerol-3-phosphate acyltransferase, at 664,081 to 664,878
Atu3609
Atu3610: Atu3610 - transporter, at 664,851 to 665,402
Atu3610
Atu8095: Atu8095 - hypothetical protein, at 665,452 to 666,453
Atu8095
Atu3611: Atu3611 - cyclohexadienyl dehydrogenase, at 666,625 to 667,554
Atu3611
Position (kb) 665
666
667 Strain fitness (log2 ratio) -2
-1
0
1 at 664.649 kb on - strand, within Atu3609 at 664.665 kb on + strand, within Atu3609 at 664.673 kb on - strand, within Atu3609 at 664.957 kb on + strand, within Atu3610 at 664.965 kb on - strand, within Atu3610 at 664.995 kb on + strand, within Atu3610 at 665.104 kb on - strand, within Atu3610 at 665.150 kb on - strand, within Atu3610 at 665.219 kb on + strand, within Atu3610 at 665.300 kb on - strand, within Atu3610 at 665.423 kb on + strand at 665.467 kb on - strand at 665.544 kb on + strand at 665.575 kb on + strand, within Atu8095 at 665.862 kb on + strand, within Atu8095 at 665.870 kb on - strand, within Atu8095 at 665.900 kb on + strand, within Atu8095 at 665.940 kb on - strand, within Atu8095 at 666.117 kb on - strand, within Atu8095 at 666.117 kb on - strand, within Atu8095 at 666.191 kb on - strand, within Atu8095 at 666.229 kb on + strand, within Atu8095 at 666.244 kb on - strand, within Atu8095 at 666.427 kb on - strand at 666.462 kb on - strand at 666.543 kb on + strand at 666.551 kb on - strand at 666.559 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Cocuture=C58C1OD2.0 remove 664,649 - Atu3609 0.71 +0.0 664,665 + Atu3609 0.73 +0.3 664,673 - Atu3609 0.74 +0.2 664,957 + Atu3610 0.19 +1.0 664,965 - Atu3610 0.21 -0.0 664,995 + Atu3610 0.26 -0.4 665,104 - Atu3610 0.46 +0.7 665,150 - Atu3610 0.54 -0.3 665,219 + Atu3610 0.67 +0.7 665,300 - Atu3610 0.81 +0.4 665,423 + +0.6 665,467 - -0.5 665,544 + -0.7 665,575 + Atu8095 0.12 -1.2 665,862 + Atu8095 0.41 -1.3 665,870 - Atu8095 0.42 -1.0 665,900 + Atu8095 0.45 -0.5 665,940 - Atu8095 0.49 -0.6 666,117 - Atu8095 0.66 -0.8 666,117 - Atu8095 0.66 -1.1 666,191 - Atu8095 0.74 -2.3 666,229 + Atu8095 0.78 -0.1 666,244 - Atu8095 0.79 -0.4 666,427 - -0.9 666,462 - +0.7 666,543 + +0.8 666,551 - -0.0 666,559 - -0.2
Or see this region's nucleotide sequence