Experiment: Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Cocuture=C58C1OD2.0
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu5098 and Atu5099 are separated by 13 nucleotides Atu5099 and Atu5100 overlap by 4 nucleotides
Atu5098: Atu5098 - hypothetical protein, at 102,464 to 103,216
Atu5098
Atu5099: Atu5099 - hypothetical protein, at 103,230 to 104,648
Atu5099
Atu5100: Atu5100 - DNA polymerase III, alpha chain, at 104,645 to 107,902
Atu5100
Position (kb) 103
104
105 Strain fitness (log2 ratio) -2
-1
0
1 at 102.301 kb on + strand at 102.359 kb on - strand at 102.364 kb on + strand at 102.372 kb on - strand at 102.372 kb on - strand at 102.372 kb on - strand at 102.468 kb on + strand at 102.473 kb on + strand at 102.521 kb on - strand at 102.555 kb on + strand, within Atu5098 at 102.601 kb on + strand, within Atu5098 at 102.704 kb on - strand, within Atu5098 at 102.726 kb on + strand, within Atu5098 at 102.739 kb on - strand, within Atu5098 at 102.767 kb on + strand, within Atu5098 at 102.767 kb on + strand, within Atu5098 at 102.801 kb on + strand, within Atu5098 at 102.801 kb on + strand, within Atu5098 at 102.803 kb on + strand, within Atu5098 at 102.812 kb on + strand, within Atu5098 at 102.820 kb on - strand, within Atu5098 at 102.889 kb on + strand, within Atu5098 at 102.957 kb on + strand, within Atu5098 at 102.975 kb on - strand, within Atu5098 at 102.975 kb on - strand, within Atu5098 at 103.060 kb on + strand, within Atu5098 at 103.060 kb on + strand, within Atu5098 at 103.067 kb on + strand, within Atu5098 at 103.090 kb on - strand, within Atu5098 at 103.147 kb on - strand at 103.209 kb on - strand at 103.296 kb on - strand at 103.309 kb on - strand at 103.342 kb on + strand at 103.342 kb on + strand at 103.350 kb on - strand at 103.379 kb on + strand, within Atu5099 at 103.387 kb on - strand, within Atu5099 at 103.415 kb on + strand, within Atu5099 at 103.517 kb on - strand, within Atu5099 at 103.584 kb on + strand, within Atu5099 at 103.592 kb on - strand, within Atu5099 at 103.592 kb on - strand, within Atu5099 at 103.617 kb on - strand, within Atu5099 at 103.643 kb on + strand, within Atu5099 at 103.643 kb on + strand, within Atu5099 at 103.742 kb on + strand, within Atu5099 at 103.762 kb on + strand, within Atu5099 at 103.770 kb on - strand, within Atu5099 at 103.849 kb on + strand, within Atu5099 at 103.857 kb on - strand, within Atu5099 at 103.857 kb on - strand, within Atu5099 at 103.876 kb on + strand, within Atu5099 at 103.974 kb on - strand, within Atu5099 at 103.976 kb on + strand, within Atu5099 at 103.981 kb on + strand, within Atu5099 at 103.981 kb on + strand, within Atu5099 at 104.011 kb on + strand, within Atu5099 at 104.125 kb on + strand, within Atu5099 at 104.163 kb on - strand, within Atu5099 at 104.176 kb on + strand, within Atu5099 at 104.181 kb on + strand, within Atu5099 at 104.184 kb on - strand, within Atu5099 at 104.186 kb on + strand, within Atu5099 at 104.189 kb on - strand, within Atu5099 at 104.191 kb on + strand, within Atu5099 at 104.196 kb on + strand, within Atu5099 at 104.258 kb on - strand, within Atu5099 at 104.303 kb on + strand, within Atu5099 at 104.332 kb on - strand, within Atu5099 at 104.352 kb on - strand, within Atu5099 at 104.377 kb on + strand, within Atu5099 at 104.382 kb on + strand, within Atu5099 at 104.416 kb on + strand, within Atu5099 at 104.424 kb on - strand, within Atu5099 at 104.458 kb on - strand, within Atu5099 at 104.677 kb on + strand at 104.722 kb on - strand at 104.731 kb on + strand at 104.784 kb on - strand at 104.795 kb on + strand at 104.795 kb on + strand at 104.795 kb on + strand at 104.803 kb on - strand at 104.836 kb on - strand at 104.962 kb on + strand at 105.031 kb on + strand, within Atu5100 at 105.163 kb on + strand, within Atu5100 at 105.226 kb on - strand, within Atu5100 at 105.227 kb on + strand, within Atu5100 at 105.296 kb on - strand, within Atu5100 at 105.521 kb on + strand, within Atu5100 at 105.521 kb on + strand, within Atu5100 at 105.521 kb on + strand, within Atu5100 at 105.523 kb on + strand, within Atu5100 at 105.529 kb on - strand, within Atu5100 at 105.529 kb on - strand, within Atu5100 at 105.543 kb on + strand, within Atu5100 at 105.592 kb on + strand, within Atu5100 at 105.600 kb on - strand, within Atu5100 at 105.617 kb on + strand, within Atu5100 at 105.637 kb on + strand, within Atu5100 at 105.645 kb on - strand, within Atu5100
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Cocuture=C58C1OD2.0 remove 102,301 + -0.0 102,359 - -0.6 102,364 + -0.3 102,372 - -0.9 102,372 - -0.7 102,372 - -0.5 102,468 + -0.7 102,473 + +1.4 102,521 - -0.0 102,555 + Atu5098 0.12 +0.1 102,601 + Atu5098 0.18 +0.6 102,704 - Atu5098 0.32 -0.9 102,726 + Atu5098 0.35 -0.9 102,739 - Atu5098 0.37 -0.6 102,767 + Atu5098 0.40 -0.2 102,767 + Atu5098 0.40 -0.2 102,801 + Atu5098 0.45 -0.9 102,801 + Atu5098 0.45 -1.7 102,803 + Atu5098 0.45 -0.1 102,812 + Atu5098 0.46 +1.3 102,820 - Atu5098 0.47 -0.5 102,889 + Atu5098 0.56 -0.4 102,957 + Atu5098 0.65 -0.2 102,975 - Atu5098 0.68 -0.3 102,975 - Atu5098 0.68 +0.0 103,060 + Atu5098 0.79 -0.5 103,060 + Atu5098 0.79 +0.3 103,067 + Atu5098 0.80 -1.1 103,090 - Atu5098 0.83 -0.1 103,147 - -0.4 103,209 - -1.0 103,296 - +1.1 103,309 - +0.1 103,342 + -0.7 103,342 + -1.7 103,350 - -0.6 103,379 + Atu5099 0.11 -0.9 103,387 - Atu5099 0.11 -0.1 103,415 + Atu5099 0.13 +0.9 103,517 - Atu5099 0.20 +0.2 103,584 + Atu5099 0.25 -0.2 103,592 - Atu5099 0.26 -0.4 103,592 - Atu5099 0.26 -2.2 103,617 - Atu5099 0.27 -1.3 103,643 + Atu5099 0.29 -0.2 103,643 + Atu5099 0.29 +0.5 103,742 + Atu5099 0.36 +1.4 103,762 + Atu5099 0.37 -0.7 103,770 - Atu5099 0.38 -0.5 103,849 + Atu5099 0.44 -0.3 103,857 - Atu5099 0.44 -0.6 103,857 - Atu5099 0.44 -0.3 103,876 + Atu5099 0.46 -1.2 103,974 - Atu5099 0.52 -0.5 103,976 + Atu5099 0.53 -2.1 103,981 + Atu5099 0.53 -0.9 103,981 + Atu5099 0.53 -0.4 104,011 + Atu5099 0.55 -0.7 104,125 + Atu5099 0.63 +0.4 104,163 - Atu5099 0.66 -0.3 104,176 + Atu5099 0.67 -0.6 104,181 + Atu5099 0.67 -0.1 104,184 - Atu5099 0.67 +1.3 104,186 + Atu5099 0.67 +0.0 104,189 - Atu5099 0.68 -1.3 104,191 + Atu5099 0.68 -0.8 104,196 + Atu5099 0.68 -0.8 104,258 - Atu5099 0.72 -0.8 104,303 + Atu5099 0.76 +0.8 104,332 - Atu5099 0.78 -1.8 104,352 - Atu5099 0.79 -0.1 104,377 + Atu5099 0.81 -0.4 104,382 + Atu5099 0.81 -0.2 104,416 + Atu5099 0.84 +1.3 104,424 - Atu5099 0.84 -0.7 104,458 - Atu5099 0.87 -0.5 104,677 + -0.1 104,722 - -0.2 104,731 + -0.3 104,784 - -0.2 104,795 + -0.4 104,795 + -1.1 104,795 + +0.3 104,803 - -0.2 104,836 - -0.8 104,962 + +0.0 105,031 + Atu5100 0.12 -0.4 105,163 + Atu5100 0.16 -0.5 105,226 - Atu5100 0.18 +1.2 105,227 + Atu5100 0.18 +0.9 105,296 - Atu5100 0.20 +0.6 105,521 + Atu5100 0.27 -0.3 105,521 + Atu5100 0.27 -0.4 105,521 + Atu5100 0.27 -0.2 105,523 + Atu5100 0.27 -0.8 105,529 - Atu5100 0.27 -0.6 105,529 - Atu5100 0.27 -0.5 105,543 + Atu5100 0.28 -0.2 105,592 + Atu5100 0.29 -0.8 105,600 - Atu5100 0.29 -1.5 105,617 + Atu5100 0.30 -1.6 105,637 + Atu5100 0.30 +0.0 105,645 - Atu5100 0.31 -0.3
Or see this region's nucleotide sequence