Strain Fitness in Agrobacterium fabrum C58 around Atu5087

Experiment: Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Cocuture=C58C1OD2.0

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Cocuture=C58C1OD2.0
89,050	+		Atu5086	0.34	-0.3
89,072	+		Atu5086	0.35	-0.5
89,112	+		Atu5086	0.38	-0.6
89,114	+		Atu5086	0.38	-0.1
89,120	-		Atu5086	0.38	+1.3
89,127	+		Atu5086	0.39	+0.3
89,170	+		Atu5086	0.42	+0.5
89,195	-		Atu5086	0.44	-0.7
89,253	+		Atu5086	0.48	+0.1
89,265	+		Atu5086	0.48	-0.4
89,295	+		Atu5086	0.51	+0.4
89,319	-		Atu5086	0.52	-0.1
89,388	-		Atu5086	0.57	+0.0
89,426	+		Atu5086	0.60	-0.2
89,435	-		Atu5086	0.60	+0.1
89,483	+		Atu5086	0.64	+0.1
89,575	-		Atu5086	0.70	-0.5
89,656	-		Atu5086	0.76	-1.5
89,692	-		Atu5086	0.78	-0.5
89,705	+		Atu5086	0.79	-0.4
89,723	-		Atu5086	0.80	-0.4
89,760	+		Atu5086	0.83	-0.2
89,760	+		Atu5086	0.83	-0.1
89,760	-		Atu5086	0.83	+0.1
89,768	-		Atu5086	0.83	+1.0
89,823	+		Atu5086	0.87	-0.2
89,826	-		Atu5086	0.87	-0.6
89,839	+		Atu5086	0.88	+1.4
89,842	+		Atu5086	0.88	-0.1
89,842	+		Atu5086	0.88	+1.4
89,855	-		Atu5086	0.89	-1.4
89,891	+				-0.6
89,901	-				-0.4
89,966	+				+0.0
90,029	-				-0.1
90,042	-				+0.3
90,099	+				-0.4
90,107	-				-0.2
90,177	-		Atu5087	0.16	+0.3
90,214	-		Atu5087	0.20	+0.2
90,229	+		Atu5087	0.21	-1.1
90,229	+		Atu5087	0.21	-0.9
90,229	+		Atu5087	0.21	-0.6
90,237	-		Atu5087	0.22	-2.2
90,257	-		Atu5087	0.24	-0.2
90,283	+		Atu5087	0.26	+1.1
90,283	+		Atu5087	0.26	-1.3
90,293	+		Atu5087	0.27	-0.2
90,374	+		Atu5087	0.35	+0.0
90,379	+		Atu5087	0.36	-1.8
90,387	-		Atu5087	0.36	+0.1
90,450	+		Atu5087	0.42	-0.2
90,537	-		Atu5087	0.51	+0.0
90,604	-		Atu5087	0.57	-1.7
90,608	+		Atu5087	0.57	-0.4
90,610	+		Atu5087	0.57	+0.5
90,618	-		Atu5087	0.58	-0.1
90,624	+		Atu5087	0.59	+0.5
90,668	+		Atu5087	0.63	-0.4
90,668	-		Atu5087	0.63	+0.4
90,676	-		Atu5087	0.64	-1.3
90,714	+		Atu5087	0.67	-0.2
90,719	+		Atu5087	0.68	-0.5
90,722	-		Atu5087	0.68	+0.2
90,790	-		Atu5087	0.75	-0.4
90,819	-		Atu5087	0.77	-0.4
90,862	-		Atu5087	0.81	-0.3
90,923	+		Atu5087	0.87	-1.1
90,931	+		Atu5087	0.88	+0.3
90,937	-		Atu5087	0.89	-0.0
90,944	+		Atu5087	0.89	-0.2
90,944	+		Atu5087	0.89	-0.1
90,944	+		Atu5087	0.89	+0.0
90,952	-				-1.4
90,956	+				-1.5
90,956	+				+0.6
90,956	+				-0.5
90,958	+				-0.5
90,958	+				-0.4
90,964	-				-0.5
90,964	-				+0.1
90,966	-				-0.2
91,080	-				+0.6
91,086	+				+0.6
91,099	+				-0.1
91,100	+				-0.4
91,108	-				-0.2
91,114	-				-0.5
91,138	-				-1.1
91,155	+				-0.5
91,210	+				-0.6
91,210	+				-0.1
91,264	+				-0.3
91,264	+				-0.1
91,272	-				+0.6
91,282	-				+0.3
91,282	-				+0.8
91,290	+				-0.5
91,290	+				-0.8
91,307	+				+0.6
91,320	-				-0.5
91,320	-				-0.3
91,354	+				+0.3
91,362	-				-0.4
91,387	+				+0.4
91,428	-				-0.1
91,497	+				-0.2
91,505	-				+0.2
91,526	+				-0.8
91,531	+				+0.8
91,534	-				-0.3
91,536	+				-0.2
91,539	-				+1.3
91,544	-				+0.0
91,656	+				-1.7
91,668	+				-1.1
91,712	+				+0.6
91,733	+				-1.0
91,764	+				+0.2
91,785	-				-0.7
91,785	-				+0.1
91,785	-				-0.4
91,796	-				-0.6
91,803	-				+0.5
91,819	+				+0.1
91,894	-				-0.9
91,904	+				-0.2
91,912	-		Atu5088	0.12	-0.9
91,973	+		Atu5088	0.38	+1.3
91,983	+		Atu5088	0.42	+0.0
92,037	-		Atu5088	0.65	-1.0