Strain Fitness in Agrobacterium fabrum C58 around Atu4711

Experiment: Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Cocuture=C58C1OD2.0

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Cocuture=C58C1OD2.0
1,873,570	-		Atu4710	0.48	-0.1
1,873,591	+		Atu4710	0.49	+2.1
1,873,772	+		Atu4710	0.60	+0.3
1,873,802	-		Atu4710	0.62	-0.1
1,873,818	-		Atu4710	0.63	+0.0
1,873,974	-		Atu4710	0.72	-0.6
1,874,023	+		Atu4710	0.75	+0.6
1,874,041	-		Atu4710	0.76	-0.4
1,874,134	+		Atu4710	0.82	-0.2
1,874,142	-		Atu4710	0.83	-1.7
1,874,173	-		Atu4710	0.84	+0.4
1,874,264	-		Atu4710	0.90	-0.1
1,874,379	+				+0.2
1,874,379	+				-0.1
1,874,379	+				+0.3
1,874,379	+				-0.5
1,874,387	-				+0.6
1,874,387	-				-0.8
1,874,387	-				-0.3
1,874,387	-				+1.9
1,874,387	-				+0.4
1,874,387	-				+0.9
1,874,387	-				+0.4
1,874,397	-				-0.7
1,874,411	+				+0.5
1,874,421	+				-0.0
1,874,468	-				-0.1
1,874,468	-				+0.4
1,874,468	-				-0.0
1,874,468	-				+0.7
1,874,501	-				-0.5
1,874,540	+				-0.1
1,874,543	-				-1.7
1,874,553	-				-0.0
1,874,648	-				-4.7
1,874,702	-		Atu4711	0.12	-0.4
1,874,946	+		Atu4711	0.30	-2.6
1,874,946	+		Atu4711	0.30	-5.4
1,874,954	-		Atu4711	0.31	-3.7
1,875,040	-		Atu4711	0.37	-0.4
1,875,064	-		Atu4711	0.39	-2.6
1,875,179	+		Atu4711	0.48	-1.6
1,875,570	-		Atu4711	0.76	-0.0
1,875,585	+		Atu4711	0.77	-6.0
1,875,679	-		Atu4711	0.84	-4.0
1,875,905	+				-0.8
1,875,906	-				+0.2
1,875,915	-				-0.0
1,875,918	+				+0.0
1,875,926	-				+0.4
1,875,927	+				-0.2
1,875,946	-				+0.0
1,875,985	+		Atu4712	0.15	-0.4
1,875,993	-		Atu4712	0.16	+1.1
1,876,039	-		Atu4712	0.23	+0.9
1,876,039	-		Atu4712	0.23	-0.1
1,876,046	-		Atu4712	0.24	+0.6
1,876,057	-		Atu4712	0.25	+1.1
1,876,064	+		Atu4712	0.27	+0.5
1,876,064	+		Atu4712	0.27	+0.4
1,876,069	+		Atu4712	0.27	+0.1
1,876,072	-		Atu4712	0.28	-0.3
1,876,072	-		Atu4712	0.28	+0.1
1,876,085	-		Atu4712	0.30	+0.3
1,876,124	+		Atu4712	0.36	-0.5
1,876,132	+		Atu4712	0.37	-0.6
1,876,132	-		Atu4712	0.37	-0.0
1,876,140	-		Atu4712	0.38	+0.2
1,876,273	+		Atu4712	0.58	-1.8
1,876,463	-		Atu4712	0.87	+1.1
1,876,622	-				+0.3
1,876,646	+				+0.1
1,876,651	+				-0.3
1,876,659	-				-1.5
1,876,659	-				-0.3
1,876,659	-				-0.2
1,876,686	+				-0.7
1,876,789	+		Atu4713	0.18	-0.0
1,876,797	-		Atu4713	0.20	-0.1
1,876,838	+		Atu4713	0.27	-0.0