Strain Fitness in Agrobacterium fabrum C58 around Atu4697

Experiment: Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Cocuture=C58C1OD2.0

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Cocuture=C58C1OD2.0
1,857,406	-				-1.0
1,857,413	+				-1.2
1,857,416	-				+0.2
1,857,497	-		Atu4696	0.13	+0.6
1,857,541	-		Atu4696	0.17	-0.6
1,857,598	-		Atu4696	0.23	+0.8
1,857,598	-		Atu4696	0.23	+1.6
1,857,661	+		Atu4696	0.30	+0.2
1,857,661	+		Atu4696	0.30	-0.8
1,857,661	+		Atu4696	0.30	-0.1
1,857,669	-		Atu4696	0.31	+2.6
1,857,669	-		Atu4696	0.31	+0.1
1,857,669	-		Atu4696	0.31	-1.0
1,857,706	+		Atu4696	0.34	+0.3
1,857,718	-		Atu4696	0.36	-0.1
1,857,938	-		Atu4696	0.58	+0.1
1,858,185	+		Atu4696	0.84	+0.8
1,858,256	-				+0.5
1,858,275	+				-0.8
1,858,277	+				+0.3
1,858,285	-				+1.0
1,858,322	+				-0.0
1,858,322	+				+0.4
1,858,322	+				+0.2
1,858,347	-				-0.7
1,858,458	+		Atu4697	0.10	-0.1
1,858,466	-		Atu4697	0.11	+0.3
1,858,559	+		Atu4697	0.21	+0.2
1,858,567	-		Atu4697	0.22	+0.5
1,858,567	-		Atu4697	0.22	+1.5
1,858,676	-		Atu4697	0.33	-0.2
1,858,712	+		Atu4697	0.37	-0.0
1,858,712	+		Atu4697	0.37	+1.2
1,858,740	-		Atu4697	0.40	+0.4
1,858,797	-		Atu4697	0.46	-2.0
1,858,799	+		Atu4697	0.46	-0.2
1,858,890	+		Atu4697	0.56	+0.7
1,858,900	-		Atu4697	0.57	+0.9
1,858,981	-		Atu4697	0.66	+0.6
1,859,224	-				+0.1
1,859,310	-				-0.0
1,859,327	-				+0.3
1,859,336	+				+0.6
1,859,359	-				-0.6
1,859,422	-				-0.3
1,859,437	-		Atu4698	0.10	-0.0
1,859,483	+		Atu4698	0.14	+0.4
1,859,488	+		Atu4698	0.15	+1.7
1,859,488	+		Atu4698	0.15	+0.7
1,859,496	-		Atu4698	0.15	+0.1
1,859,662	+		Atu4698	0.29	-0.2
1,859,695	+		Atu4698	0.32	+0.1
1,859,767	+		Atu4698	0.38	+0.5
1,859,827	+		Atu4698	0.43	-0.4
1,859,931	+		Atu4698	0.52	-0.7
1,859,970	+		Atu4698	0.55	+1.0
1,860,013	+		Atu4698	0.59	-0.7
1,860,016	-		Atu4698	0.59	-0.2
1,860,030	+		Atu4698	0.60	+0.1
1,860,036	+		Atu4698	0.61	-0.7
1,860,044	-		Atu4698	0.61	-0.6
1,860,105	+		Atu4698	0.66	-0.4
1,860,261	-		Atu4698	0.79	-0.6
1,860,302	+		Atu4698	0.83	+0.1