Strain Fitness in Agrobacterium fabrum C58 around Atu4648

Experiment: Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Cocuture=C58C1OD2.0

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Cocuture=C58C1OD2.0
1,800,311	+				+0.7
1,800,374	-				-0.1
1,800,374	-				+0.1
1,800,378	-				-0.2
1,800,516	-		Atu4647	0.20	+0.1
1,800,523	+		Atu4647	0.20	+2.1
1,800,558	-		Atu4647	0.24	+0.4
1,800,667	+		Atu4647	0.35	+0.1
1,800,700	+		Atu4647	0.39	+0.4
1,800,708	-		Atu4647	0.40	-2.8
1,800,812	+		Atu4647	0.51	+0.6
1,800,888	-		Atu4647	0.59	+2.7
1,800,895	+		Atu4647	0.59	+0.3
1,800,903	-		Atu4647	0.60	+0.3
1,800,913	+		Atu4647	0.61	-0.6
1,801,023	+		Atu4647	0.73	-1.0
1,801,273	-				-0.1
1,801,307	+				+0.3
1,801,417	-				-0.1
1,801,431	-				+0.4
1,801,431	-				-0.7
1,801,476	-		Atu4648	0.12	+0.6
1,801,478	-		Atu4648	0.12	+0.5
1,801,628	+		Atu4648	0.22	+0.4
1,801,628	+		Atu4648	0.22	+0.6
1,801,636	-		Atu4648	0.22	+0.6
1,801,636	-		Atu4648	0.22	+0.4
1,801,636	-		Atu4648	0.22	-0.4
1,801,777	+		Atu4648	0.32	+0.1
1,801,777	+		Atu4648	0.32	-0.1
1,801,824	-		Atu4648	0.35	+0.6
1,802,028	+		Atu4648	0.48	-0.2
1,802,213	+		Atu4648	0.61	+0.5
1,802,306	+		Atu4648	0.67	-0.6
1,802,316	+		Atu4648	0.67	+0.2
1,802,422	+		Atu4648	0.74	+0.1
1,802,441	+		Atu4648	0.76	+0.8
1,802,519	-		Atu4648	0.81	+0.3
1,802,666	+				-0.4
1,802,673	+				-0.0
1,802,681	-				+0.5
1,802,704	-				+2.0
1,802,722	+				-0.4
1,802,722	+				+0.1
1,802,730	-				+1.0
1,802,762	+				-0.2
1,802,771	-				-0.5
1,802,771	-				+0.1
1,802,812	+				+0.2
1,802,876	-				+1.1
1,802,894	+				+1.0
1,802,964	-		Atu4649	0.16	-0.4
1,803,010	-		Atu4649	0.21	-0.3
1,803,026	+		Atu4649	0.23	+0.7
1,803,033	+		Atu4649	0.23	+0.6
1,803,033	+		Atu4649	0.23	+0.5
1,803,041	-		Atu4649	0.24	-0.1
1,803,061	-		Atu4649	0.27	+0.3
1,803,108	+		Atu4649	0.32	+0.1
1,803,184	-		Atu4649	0.40	+0.5
1,803,184	-		Atu4649	0.40	+0.0
1,803,184	-		Atu4649	0.40	-0.2
1,803,194	-		Atu4649	0.41	+0.5
1,803,199	+		Atu4649	0.42	-0.5
1,803,207	-		Atu4649	0.43	+0.0
1,803,347	+		Atu4649	0.59	-3.4
1,803,361	-		Atu4649	0.60	+0.2
1,803,391	+		Atu4649	0.63	+0.6
1,803,454	+		Atu4649	0.70	+0.2
1,803,460	+		Atu4649	0.71	-0.6
1,803,512	+		Atu4649	0.77	-0.8
1,803,512	+		Atu4649	0.77	-0.2
1,803,520	-		Atu4649	0.78	+0.1
1,803,626	-		Atu4649	0.90	-0.2
1,803,681	-				-0.7
1,803,731	-				+0.6