Strain Fitness in Agrobacterium fabrum C58 around Atu4349

Experiment: Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Cocuture=C58C1OD2.0

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Cocuture=C58C1OD2.0
1,483,048	+		Atu4348	0.63	+0.1
1,483,096	+		Atu4348	0.65	-0.1
1,483,101	+		Atu4348	0.66	-0.1
1,483,147	+		Atu4348	0.67	-0.5
1,483,191	+		Atu4348	0.69	-0.8
1,483,315	-		Atu4348	0.74	+0.4
1,483,332	-		Atu4348	0.75	+0.1
1,483,536	-		Atu4348	0.83	-1.7
1,483,644	+		Atu4348	0.88	-0.2
1,483,960	+				+0.1
1,483,961	+				+0.4
1,483,982	-				+0.3
1,484,037	-				+0.0
1,484,194	+		Atu4349	0.26	-0.7
1,484,290	-		Atu4349	0.36	-1.6
1,484,293	+		Atu4349	0.36	+0.1
1,484,332	+		Atu4349	0.40	-0.2
1,484,588	+		Atu4349	0.67	-0.4
1,484,603	-		Atu4349	0.68	-2.1
1,484,669	-		Atu4349	0.75	-0.5
1,484,711	-		Atu4349	0.80	+0.5
1,484,738	+		Atu4349	0.83	-1.2
1,484,919	-				+0.3
1,485,004	-		Atu4350	0.12	-0.1
1,485,019	-		Atu4350	0.14	-0.1
1,485,053	-		Atu4350	0.18	-0.1
1,485,142	-		Atu4350	0.29	+0.8
1,485,142	-		Atu4350	0.29	-0.6
1,485,212	+		Atu4350	0.37	-0.2
1,485,220	-		Atu4350	0.38	+1.1
1,485,260	+		Atu4350	0.43	-0.6
1,485,297	+		Atu4350	0.47	-0.1
1,485,473	-		Atu4350	0.68	+0.9