Strain Fitness in Agrobacterium fabrum C58 around Atu4244

Experiment: Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Cocuture=C58C1OD2.0

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Cocuture=C58C1OD2.0
1,367,548	+				+0.3
1,367,677	+		Atu4243	0.22	-1.5
1,367,677	-		Atu4243	0.22	+0.4
1,367,720	-		Atu4243	0.26	-0.5
1,367,826	-		Atu4243	0.37	-0.5
1,367,875	+		Atu4243	0.42	-0.4
1,367,885	+		Atu4243	0.43	-0.6
1,367,919	+		Atu4243	0.46	-0.3
1,367,919	+		Atu4243	0.46	+0.2
1,367,966	-		Atu4243	0.51	+0.6
1,368,031	-		Atu4243	0.57	+0.6
1,368,102	+		Atu4243	0.64	-1.2
1,368,102	+		Atu4243	0.64	-0.4
1,368,102	+		Atu4243	0.64	+0.3
1,368,133	-		Atu4243	0.67	+0.4
1,368,136	+		Atu4243	0.67	+0.0
1,368,136	+		Atu4243	0.67	+0.4
1,368,151	+		Atu4243	0.69	+0.4
1,368,151	+		Atu4243	0.69	+0.5
1,368,158	+		Atu4243	0.70	-0.5
1,368,207	+		Atu4243	0.74	-0.9
1,368,225	+		Atu4243	0.76	+0.1
1,368,296	+		Atu4243	0.83	-0.1
1,368,394	-				+0.2
1,368,409	-				+0.6
1,368,523	-				+0.5
1,368,524	-				-0.0
1,368,566	-				+0.4
1,368,642	+		Atu4244	0.13	-0.1
1,368,702	+		Atu4244	0.20	+1.2
1,368,710	+		Atu4244	0.21	-0.1
1,368,718	-		Atu4244	0.22	+0.4
1,368,718	-		Atu4244	0.22	-0.4
1,368,718	-		Atu4244	0.22	+0.4
1,368,718	-		Atu4244	0.22	+0.6
1,368,728	-		Atu4244	0.23	+0.3
1,368,769	+		Atu4244	0.28	+0.6
1,368,777	-		Atu4244	0.29	+0.7
1,368,884	+		Atu4244	0.41	+0.0
1,368,932	-		Atu4244	0.47	+0.5
1,369,026	-		Atu4244	0.57	-0.3
1,369,113	-		Atu4244	0.67	-0.4
1,369,239	-		Atu4244	0.82	+0.6
1,369,290	-		Atu4244	0.87	+0.1
1,369,290	-		Atu4244	0.87	+0.1
1,369,291	+		Atu4244	0.88	+1.8
1,369,355	+				-0.3
1,369,383	+				+1.2
1,369,391	-				+1.0
1,369,456	-				+0.5
1,369,456	-				+0.1
1,369,473	-				-0.3
1,369,595	+		Atu4245	0.24	-0.2
1,369,626	+		Atu4245	0.28	-1.0
1,369,638	+		Atu4245	0.30	-0.2
1,369,855	-		Atu4245	0.57	-0.3
1,369,885	-		Atu4245	0.60	+0.6
1,369,916	+		Atu4245	0.64	-0.4
1,369,919	+		Atu4245	0.65	+0.9
1,369,972	+		Atu4245	0.71	+0.2
1,370,014	+		Atu4245	0.77	-0.9
1,370,132	-				-1.1
1,370,134	-				-0.1
1,370,256	-				-0.2
1,370,293	+				+0.2
1,370,301	-				-0.5
1,370,301	-				+0.4
1,370,339	+		Atu4246	0.13	+0.1
1,370,347	-		Atu4246	0.14	-0.2