Strain Fitness in Agrobacterium fabrum C58 around Atu4157

Experiment: Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Cocuture=C58C1OD2.0

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Cocuture=C58C1OD2.0
1,273,693	+				+0.4
1,273,704	+				+0.0
1,273,753	+				+0.7
1,273,781	-		Atu4156	0.13	+0.0
1,273,823	+		Atu4156	0.18	+0.1
1,273,828	+		Atu4156	0.19	+0.6
1,274,064	+		Atu4156	0.47	-0.5
1,274,150	+		Atu4156	0.58	+0.6
1,274,181	-		Atu4156	0.61	+1.0
1,274,205	+		Atu4156	0.64	+0.0
1,274,226	+		Atu4156	0.67	-0.5
1,274,284	-		Atu4156	0.74	-0.2
1,274,404	-		Atu4156	0.88	+0.6
1,274,452	-				+0.2
1,274,466	-				-0.1
1,274,515	+				-1.2
1,274,594	+				+0.2
1,274,602	-				-1.0
1,274,611	-				-0.6
1,274,618	+				-0.7
1,274,618	+				-0.1
1,274,633	-				-0.4
1,274,764	-				-1.1
1,274,840	-				-2.6
1,274,851	-				-1.7
1,274,863	+				-0.5
1,274,982	+		Atu4157	0.12	+0.9
1,275,032	-		Atu4157	0.13	-1.1
1,275,104	-		Atu4157	0.15	-0.4
1,275,129	-		Atu4157	0.16	-0.4
1,275,219	+		Atu4157	0.18	-1.6
1,275,326	+		Atu4157	0.21	-1.0
1,275,353	-		Atu4157	0.22	-0.1
1,275,398	+		Atu4157	0.23	+0.0
1,275,411	-		Atu4157	0.24	-0.9
1,275,561	+		Atu4157	0.28	+0.7
1,275,602	+		Atu4157	0.29	-1.4
1,275,602	+		Atu4157	0.29	-1.7
1,275,677	-		Atu4157	0.31	-1.0
1,275,700	+		Atu4157	0.31	-1.0
1,275,705	+		Atu4157	0.32	-1.2
1,275,710	+		Atu4157	0.32	-0.9
1,275,725	+		Atu4157	0.32	-0.7
1,275,802	-		Atu4157	0.34	-0.7
1,275,894	-		Atu4157	0.37	+0.5
1,275,975	-		Atu4157	0.39	+0.0
1,276,006	+		Atu4157	0.40	-1.1
1,276,014	-		Atu4157	0.40	-0.8
1,276,018	+		Atu4157	0.40	-1.3
1,276,055	-		Atu4157	0.41	-0.6
1,276,146	-		Atu4157	0.44	+1.6
1,276,181	+		Atu4157	0.45	-2.1
1,276,181	+		Atu4157	0.45	-0.3
1,276,183	+		Atu4157	0.45	-0.7
1,276,194	-		Atu4157	0.45	-0.5
1,276,247	+		Atu4157	0.46	-0.9
1,276,275	-		Atu4157	0.47	-0.2
1,276,282	+		Atu4157	0.47	-0.8
1,276,308	-		Atu4157	0.48	-2.5
1,276,357	-		Atu4157	0.49	-1.4
1,276,451	+		Atu4157	0.52	-0.1
1,276,481	-		Atu4157	0.53	-0.8
1,276,572	-		Atu4157	0.55	-0.1
1,276,611	-		Atu4157	0.56	-0.0
1,276,645	+		Atu4157	0.57	-0.2
1,276,647	+		Atu4157	0.57	-1.5
1,276,647	+		Atu4157	0.57	+0.6
1,276,653	+		Atu4157	0.57	+0.2
1,276,653	+		Atu4157	0.57	-1.4
1,276,653	+		Atu4157	0.57	+1.1
1,276,653	+		Atu4157	0.57	+0.1
1,276,655	-		Atu4157	0.57	+0.1
1,276,661	-		Atu4157	0.58	-0.9
1,276,753	-		Atu4157	0.60	-0.2
1,276,764	+		Atu4157	0.60	-0.3
1,276,767	-		Atu4157	0.60	+0.3
1,276,772	-		Atu4157	0.61	+0.1
1,276,856	-		Atu4157	0.63	-1.7
1,276,916	+		Atu4157	0.64	-1.5
1,276,935	+		Atu4157	0.65	-1.3
1,276,935	+		Atu4157	0.65	+0.0
1,276,943	-		Atu4157	0.65	-0.9
1,277,067	+		Atu4157	0.69	-0.2
1,277,067	+		Atu4157	0.69	-0.6
1,277,067	-		Atu4157	0.69	+1.0
1,277,157	-		Atu4157	0.71	-1.1
1,277,168	+		Atu4157	0.71	-0.9
1,277,193	+		Atu4157	0.72	-0.4
1,277,198	+		Atu4157	0.72	-0.6
1,277,222	+		Atu4157	0.73	-0.9
1,277,322	-		Atu4157	0.75	-0.3
1,277,474	-		Atu4157	0.80	-0.7
1,277,480	-		Atu4157	0.80	-1.2
1,277,537	+		Atu4157	0.81	-1.0
1,277,666	+		Atu4157	0.85	-0.1
1,277,666	+		Atu4157	0.85	-0.8
1,277,803	-		Atu4157	0.89	-0.7
1,277,822	-		Atu4157	0.89	-0.8
1,277,858	+				-3.9
1,277,858	+				-1.5
1,277,866	-				-0.8
1,278,032	+				-0.7
1,278,041	-				-0.5
1,278,041	-				+0.1
1,278,184	-				-0.6
1,278,248	+				+0.3
1,278,256	-				+0.6
1,278,271	+				-1.0
1,278,560	+		Atu4159	0.34	-0.7
1,278,653	+		Atu4159	0.53	-0.3
1,278,684	-		Atu4159	0.60	-0.6
1,278,694	-		Atu4159	0.62	-0.8
1,278,708	-		Atu4159	0.65	-1.6
1,278,742	+		Atu4159	0.72	-0.5
1,278,825	+		Atu4159	0.90	+0.1
1,278,826	-				+1.6
1,278,840	+				-0.5
1,278,968	+				-1.7
1,278,976	-				-0.9
1,278,976	-				+0.0
1,279,035	+		Atu4160	0.17	-0.9
1,279,054	+		Atu4160	0.20	+0.4
1,279,062	-		Atu4160	0.22	-0.6