Strain Fitness in Agrobacterium fabrum C58 around Atu4155

Experiment: Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Cocuture=C58C1OD2.0

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Cocuture=C58C1OD2.0
1,271,891	+				+1.3
1,271,891	+				+0.5
1,272,074	+		Atu4154	0.18	+0.7
1,272,092	+		Atu4154	0.19	+0.1
1,272,100	-		Atu4154	0.20	+0.3
1,272,104	+		Atu4154	0.21	+1.6
1,272,239	+		Atu4154	0.35	+0.0
1,272,319	-		Atu4154	0.43	+0.3
1,272,398	+		Atu4154	0.51	-0.9
1,272,511	+		Atu4154	0.63	+0.0
1,272,531	-		Atu4154	0.65	+0.3
1,272,554	-		Atu4154	0.68	-0.1
1,272,588	+		Atu4154	0.71	-0.1
1,272,593	+		Atu4154	0.72	+0.5
1,272,613	-		Atu4154	0.74	+0.6
1,272,639	+		Atu4154	0.77	+1.1
1,272,808	+				+0.1
1,272,821	-				-0.5
1,272,823	+				-0.8
1,272,826	-				+0.9
1,272,865	+				-0.1
1,272,890	+				+0.1
1,273,042	+		Atu4155	0.21	-0.2
1,273,140	+		Atu4155	0.33	-0.6
1,273,148	-		Atu4155	0.34	+0.4
1,273,150	+		Atu4155	0.34	+1.6
1,273,158	-		Atu4155	0.35	+0.1
1,273,184	-		Atu4155	0.39	+0.5
1,273,353	-		Atu4155	0.60	+0.3
1,273,354	+		Atu4155	0.60	+0.8
1,273,362	-		Atu4155	0.61	+0.7
1,273,369	-		Atu4155	0.62	+3.4
1,273,395	+		Atu4155	0.66	+0.0
1,273,441	-		Atu4155	0.72	-0.8
1,273,474	-		Atu4155	0.76	+0.6
1,273,693	+				+0.4
1,273,704	+				+0.0
1,273,753	+				+0.7
1,273,781	-		Atu4156	0.13	+0.0
1,273,823	+		Atu4156	0.18	+0.1
1,273,828	+		Atu4156	0.19	+0.6
1,274,064	+		Atu4156	0.47	-0.5
1,274,150	+		Atu4156	0.58	+0.6
1,274,181	-		Atu4156	0.61	+1.0
1,274,205	+		Atu4156	0.64	+0.0
1,274,226	+		Atu4156	0.67	-0.5
1,274,284	-		Atu4156	0.74	-0.2
1,274,404	-		Atu4156	0.88	+0.6
1,274,452	-				+0.2
1,274,466	-				-0.1
1,274,515	+				-1.2
1,274,594	+				+0.2
1,274,602	-				-1.0
1,274,611	-				-0.6
1,274,618	+				-0.7
1,274,618	+				-0.1
1,274,633	-				-0.4