Strain Fitness in Agrobacterium fabrum C58 around Atu3918

Experiment: Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Cocuture=C58C1OD2.0

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Cocuture=C58C1OD2.0
1,019,763	+		Atu3917	0.41	+1.6
1,019,764	-		Atu3917	0.41	+0.4
1,019,781	-		Atu3917	0.42	+0.1
1,019,914	-		Atu3917	0.51	-2.6
1,019,982	-		Atu3917	0.55	+0.4
1,020,025	-		Atu3917	0.58	+0.1
1,020,036	+		Atu3917	0.59	+0.4
1,020,036	+		Atu3917	0.59	-0.1
1,020,036	+		Atu3917	0.59	+0.8
1,020,036	+		Atu3917	0.59	+0.2
1,020,083	-		Atu3917	0.62	+0.2
1,020,144	-		Atu3917	0.66	-0.4
1,020,164	-		Atu3917	0.68	+1.7
1,020,191	-		Atu3917	0.70	-1.5
1,020,201	-		Atu3917	0.70	+2.3
1,020,262	-		Atu3917	0.74	+0.8
1,020,347	-		Atu3917	0.80	-0.9
1,020,442	+		Atu3917	0.87	+0.2
1,020,546	+				+0.7
1,020,548	-				-0.1
1,020,554	-				-0.1
1,020,585	-				-1.8
1,020,597	+				+0.0
1,020,625	+				+0.4
1,020,630	+				+0.7
1,020,630	+				+0.4
1,020,638	-				-0.3
1,020,638	-				+0.0
1,020,640	+				-2.0
1,020,664	-				-3.6
1,020,767	+		Atu3918	0.10	+0.3
1,021,030	+		Atu3918	0.32	-0.0
1,021,073	-		Atu3918	0.36	-0.2
1,021,080	+		Atu3918	0.36	+0.0
1,021,088	-		Atu3918	0.37	-0.3
1,021,197	-		Atu3918	0.46	+0.5
1,021,233	-		Atu3918	0.49	+0.4
1,021,257	-		Atu3918	0.51	+0.4
1,021,259	-		Atu3918	0.51	+0.1
1,021,306	+		Atu3918	0.55	-1.2
1,021,314	-		Atu3918	0.56	+0.0
1,021,314	-		Atu3918	0.56	+0.8
1,021,351	+		Atu3918	0.59	+0.5
1,021,351	+		Atu3918	0.59	+0.8
1,021,356	+		Atu3918	0.59	+0.6
1,021,359	-		Atu3918	0.60	+1.2
1,021,368	-		Atu3918	0.60	-0.2
1,021,369	-		Atu3918	0.61	+0.9
1,021,471	+		Atu3918	0.69	+0.0
1,021,479	-		Atu3918	0.70	+0.2
1,021,484	-		Atu3918	0.70	+0.4
1,021,510	+		Atu3918	0.72	-0.9
1,021,566	-		Atu3918	0.77	+0.2
1,021,588	+		Atu3918	0.79	+1.0
1,021,623	-		Atu3918	0.82	+0.2
1,021,623	-		Atu3918	0.82	+0.2
1,021,722	+				-0.3
1,021,743	+				+0.8
1,021,882	+				-0.5
1,021,890	-				+0.4
1,021,893	+				-0.8
1,021,895	-				-0.2
1,021,936	-		Atu3919	0.14	+0.2
1,022,038	-		Atu3919	0.49	+0.5
1,022,046	-		Atu3919	0.52	+0.2
1,022,071	+		Atu3919	0.61	+0.3
1,022,104	-		Atu3919	0.73	+0.3
1,022,143	+		Atu3919	0.86	-0.6
1,022,143	+		Atu3919	0.86	+0.8
1,022,155	+				+1.5
1,022,209	+				-0.1
1,022,299	-				-0.2
1,022,310	-		Atu3920	0.12	+0.1
1,022,341	-		Atu3920	0.24	+2.6
1,022,396	-		Atu3920	0.45	-0.0
1,022,427	-		Atu3920	0.57	+0.0
1,022,434	-		Atu3920	0.60	+1.1
1,022,492	-		Atu3920	0.82	+0.4
1,022,541	+				-0.1
1,022,552	+				-1.2
1,022,565	+				-1.1
1,022,592	-				+0.4
1,022,803	+				-0.0