Experiment: Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Cocuture=C58C1OD2.0
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3701 and Atu3702 are separated by 286 nucleotides Atu3702 and Atu3703 are separated by 136 nucleotides Atu3703 and Atu3704 are separated by 252 nucleotides
Atu3701: Atu3701 - glutathione S-transferase, at 779,833 to 780,525
Atu3701
Atu3702: Atu3702 - tRNA-Met, at 780,812 to 780,888
Atu3702
Atu3703: Atu3703 - tRNA-specific 2-thiouridylase MnmA, at 781,025 to 782,167
Atu3703
Atu3704: Atu3704 - hypothetical protein, at 782,420 to 783,610
Atu3704
Position (kb) 781
782
783 Strain fitness (log2 ratio) -2
-1
0
1
2 at 780.071 kb on + strand, within Atu3701 at 780.079 kb on - strand, within Atu3701 at 780.110 kb on - strand, within Atu3701 at 780.208 kb on + strand, within Atu3701 at 780.234 kb on - strand, within Atu3701 at 780.317 kb on - strand, within Atu3701 at 780.418 kb on - strand, within Atu3701 at 780.438 kb on - strand, within Atu3701 at 780.438 kb on - strand, within Atu3701 at 780.451 kb on + strand, within Atu3701 at 780.466 kb on + strand at 780.532 kb on - strand at 780.534 kb on + strand at 780.650 kb on + strand at 780.657 kb on + strand at 780.658 kb on - strand at 780.665 kb on - strand at 780.677 kb on + strand at 780.738 kb on - strand at 780.759 kb on - strand at 781.040 kb on - strand at 781.075 kb on + strand at 781.092 kb on + strand at 782.239 kb on + strand at 782.258 kb on - strand at 782.323 kb on + strand at 782.331 kb on - strand at 782.416 kb on + strand at 782.521 kb on + strand at 782.531 kb on - strand at 782.542 kb on + strand, within Atu3704 at 782.550 kb on - strand, within Atu3704 at 782.550 kb on - strand, within Atu3704 at 782.550 kb on - strand, within Atu3704 at 782.598 kb on + strand, within Atu3704 at 782.723 kb on + strand, within Atu3704 at 782.758 kb on + strand, within Atu3704 at 782.842 kb on - strand, within Atu3704 at 782.854 kb on - strand, within Atu3704 at 782.870 kb on + strand, within Atu3704 at 782.870 kb on + strand, within Atu3704 at 782.878 kb on - strand, within Atu3704 at 782.955 kb on + strand, within Atu3704 at 782.955 kb on + strand, within Atu3704 at 782.963 kb on - strand, within Atu3704 at 782.998 kb on + strand, within Atu3704 at 783.012 kb on + strand, within Atu3704 at 783.041 kb on - strand, within Atu3704 at 783.055 kb on + strand, within Atu3704 at 783.126 kb on + strand, within Atu3704
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Cocuture=C58C1OD2.0 remove 780,071 + Atu3701 0.34 +0.6 780,079 - Atu3701 0.35 -1.1 780,110 - Atu3701 0.40 -0.7 780,208 + Atu3701 0.54 -0.8 780,234 - Atu3701 0.58 -0.3 780,317 - Atu3701 0.70 -0.4 780,418 - Atu3701 0.84 +0.6 780,438 - Atu3701 0.87 -0.3 780,438 - Atu3701 0.87 +0.5 780,451 + Atu3701 0.89 +1.2 780,466 + +1.2 780,532 - +0.6 780,534 + +1.1 780,650 + +0.7 780,657 + -1.3 780,658 - +0.9 780,665 - -2.1 780,677 + +0.0 780,738 - +0.2 780,759 - +0.6 781,040 - +0.2 781,075 + -0.7 781,092 + +0.1 782,239 + +0.4 782,258 - -0.6 782,323 + -1.5 782,331 - +0.1 782,416 + -0.8 782,521 + +0.4 782,531 - -0.1 782,542 + Atu3704 0.10 +0.8 782,550 - Atu3704 0.11 +0.7 782,550 - Atu3704 0.11 +0.7 782,550 - Atu3704 0.11 +1.6 782,598 + Atu3704 0.15 +0.5 782,723 + Atu3704 0.25 +0.7 782,758 + Atu3704 0.28 +2.2 782,842 - Atu3704 0.35 -0.1 782,854 - Atu3704 0.36 +0.8 782,870 + Atu3704 0.38 +0.7 782,870 + Atu3704 0.38 +0.4 782,878 - Atu3704 0.38 +0.5 782,955 + Atu3704 0.45 +1.6 782,955 + Atu3704 0.45 -0.3 782,963 - Atu3704 0.46 +0.8 782,998 + Atu3704 0.49 -1.6 783,012 + Atu3704 0.50 +0.7 783,041 - Atu3704 0.52 -1.0 783,055 + Atu3704 0.53 +1.5 783,126 + Atu3704 0.59 +0.6
Or see this region's nucleotide sequence