Strain Fitness in Agrobacterium fabrum C58 around Atu3681

Experiment: Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Cocuture=C58C1OD2.0

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu3679 and Atu3680 overlap by 4 nucleotidesAtu3680 and Atu3681 are separated by 37 nucleotidesAtu3681 and Atu3682 overlap by 4 nucleotides Atu3679: Atu3679 - siderophore biosynthesis protein, at 736,961 to 737,479 Atu3679 Atu3680: Atu3680 - siderophore biosynthesis protein, at 737,476 to 738,039 Atu3680 Atu3681: Atu3681 - polyketide synthase, at 738,077 to 742,510 Atu3681 Atu3682: Atu3682 - non-ribosomal peptide synthetase, siderophore biosynthesis protein, at 742,507 to 749,706 Atu3682 Position (kb) 738 739 740 741 742 743Strain fitness (log2 ratio) -2 -1 0 1 2 3at 737.149 kb on + strand, within Atu3679at 737.342 kb on - strand, within Atu3679at 737.361 kb on - strand, within Atu3679at 737.467 kb on - strandat 737.469 kb on + strandat 737.475 kb on - strandat 737.557 kb on - strand, within Atu3680at 737.557 kb on - strand, within Atu3680at 737.610 kb on + strand, within Atu3680at 737.648 kb on + strand, within Atu3680at 737.798 kb on - strand, within Atu3680at 737.830 kb on + strand, within Atu3680at 737.874 kb on - strand, within Atu3680at 737.874 kb on - strand, within Atu3680at 737.903 kb on + strand, within Atu3680at 737.968 kb on + strand, within Atu3680at 737.976 kb on - strand, within Atu3680at 738.013 kb on + strandat 738.035 kb on + strandat 738.076 kb on - strandat 738.091 kb on - strandat 738.312 kb on - strandat 738.322 kb on - strandat 738.407 kb on + strandat 738.415 kb on - strandat 738.415 kb on - strandat 738.456 kb on - strandat 738.472 kb on - strandat 738.483 kb on + strandat 738.488 kb on + strandat 738.534 kb on + strand, within Atu3681at 738.610 kb on + strand, within Atu3681at 738.610 kb on + strand, within Atu3681at 738.610 kb on + strand, within Atu3681at 738.618 kb on - strand, within Atu3681at 738.618 kb on - strand, within Atu3681at 738.623 kb on - strand, within Atu3681at 738.719 kb on - strand, within Atu3681at 738.812 kb on + strand, within Atu3681at 738.812 kb on + strand, within Atu3681at 738.825 kb on - strand, within Atu3681at 738.831 kb on + strand, within Atu3681at 738.836 kb on + strand, within Atu3681at 738.954 kb on + strand, within Atu3681at 738.964 kb on + strand, within Atu3681at 738.983 kb on + strand, within Atu3681at 739.028 kb on - strand, within Atu3681at 739.050 kb on + strand, within Atu3681at 739.079 kb on - strand, within Atu3681at 739.098 kb on + strand, within Atu3681at 739.106 kb on - strand, within Atu3681at 739.186 kb on + strand, within Atu3681at 739.290 kb on + strand, within Atu3681at 739.298 kb on - strand, within Atu3681at 739.313 kb on + strand, within Atu3681at 739.313 kb on + strand, within Atu3681at 739.313 kb on + strand, within Atu3681at 739.321 kb on - strand, within Atu3681at 739.321 kb on - strand, within Atu3681at 739.321 kb on - strand, within Atu3681at 739.321 kb on - strand, within Atu3681at 739.324 kb on + strand, within Atu3681at 739.467 kb on - strand, within Atu3681at 739.633 kb on - strand, within Atu3681at 739.666 kb on - strand, within Atu3681at 739.748 kb on - strand, within Atu3681at 739.752 kb on - strand, within Atu3681at 739.828 kb on - strand, within Atu3681at 739.894 kb on - strand, within Atu3681at 739.894 kb on - strand, within Atu3681at 739.903 kb on + strand, within Atu3681at 739.918 kb on + strand, within Atu3681at 739.918 kb on + strand, within Atu3681at 739.920 kb on + strand, within Atu3681at 739.920 kb on + strand, within Atu3681at 739.920 kb on + strand, within Atu3681at 739.926 kb on - strand, within Atu3681at 739.926 kb on - strand, within Atu3681at 739.926 kb on - strand, within Atu3681at 739.951 kb on - strand, within Atu3681at 740.080 kb on - strand, within Atu3681at 740.087 kb on + strand, within Atu3681at 740.111 kb on + strand, within Atu3681at 740.113 kb on + strand, within Atu3681at 740.130 kb on + strand, within Atu3681at 740.130 kb on + strand, within Atu3681at 740.224 kb on + strand, within Atu3681at 740.224 kb on + strand, within Atu3681at 740.232 kb on - strand, within Atu3681at 740.280 kb on + strand, within Atu3681at 740.360 kb on - strand, within Atu3681at 740.366 kb on - strand, within Atu3681at 740.477 kb on - strand, within Atu3681at 740.489 kb on - strand, within Atu3681at 740.498 kb on - strand, within Atu3681at 740.537 kb on - strand, within Atu3681at 740.549 kb on - strand, within Atu3681at 740.581 kb on - strand, within Atu3681at 740.729 kb on + strand, within Atu3681at 740.732 kb on + strand, within Atu3681at 740.869 kb on + strand, within Atu3681at 740.877 kb on - strand, within Atu3681at 740.890 kb on + strand, within Atu3681at 740.903 kb on + strand, within Atu3681at 740.916 kb on + strand, within Atu3681at 740.924 kb on - strand, within Atu3681at 740.940 kb on + strand, within Atu3681at 740.948 kb on - strand, within Atu3681at 741.009 kb on - strand, within Atu3681at 741.024 kb on + strand, within Atu3681at 741.085 kb on + strand, within Atu3681at 741.109 kb on + strand, within Atu3681at 741.201 kb on + strand, within Atu3681at 741.238 kb on - strand, within Atu3681at 741.268 kb on + strand, within Atu3681at 741.276 kb on - strand, within Atu3681at 741.366 kb on + strand, within Atu3681at 741.374 kb on - strand, within Atu3681at 741.374 kb on - strand, within Atu3681at 741.374 kb on - strand, within Atu3681at 741.385 kb on + strand, within Atu3681at 741.498 kb on + strand, within Atu3681at 741.575 kb on - strand, within Atu3681at 741.575 kb on - strand, within Atu3681at 741.624 kb on - strand, within Atu3681at 741.865 kb on + strand, within Atu3681at 741.873 kb on + strand, within Atu3681at 741.906 kb on + strand, within Atu3681at 741.914 kb on + strand, within Atu3681at 742.088 kb on - strandat 742.253 kb on - strandat 742.312 kb on + strandat 742.384 kb on - strandat 742.468 kb on - strandat 742.544 kb on - strandat 742.595 kb on - strandat 742.597 kb on + strandat 742.645 kb on + strandat 742.645 kb on + strandat 742.653 kb on - strandat 742.653 kb on - strandat 742.653 kb on - strandat 742.713 kb on - strandat 742.749 kb on - strandat 742.921 kb on + strandat 742.929 kb on - strandat 742.960 kb on - strandat 743.031 kb on + strandat 743.055 kb on + strandat 743.082 kb on + strandat 743.102 kb on + strandat 743.105 kb on - strandat 743.105 kb on - strandat 743.105 kb on - strandat 743.116 kb on - strandat 743.168 kb on + strandat 743.228 kb on + strand, within Atu3682at 743.242 kb on + strand, within Atu3682at 743.242 kb on + strand, within Atu3682at 743.250 kb on + strand, within Atu3682at 743.250 kb on - strand, within Atu3682at 743.250 kb on - strand, within Atu3682at 743.327 kb on + strand, within Atu3682at 743.333 kb on - strand, within Atu3682at 743.345 kb on - strand, within Atu3682at 743.445 kb on - strand, within Atu3682at 743.468 kb on + strand, within Atu3682

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Cocuture=C58C1OD2.0
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737,149 + Atu3679 0.36 +0.4
737,342 - Atu3679 0.73 +0.2
737,361 - Atu3679 0.77 -0.4
737,467 - +0.2
737,469 + +0.0
737,475 - +0.1
737,557 - Atu3680 0.14 +0.5
737,557 - Atu3680 0.14 +0.0
737,610 + Atu3680 0.24 -0.4
737,648 + Atu3680 0.30 -1.0
737,798 - Atu3680 0.57 +0.1
737,830 + Atu3680 0.63 +0.6
737,874 - Atu3680 0.71 -0.2
737,874 - Atu3680 0.71 -0.6
737,903 + Atu3680 0.76 +0.1
737,968 + Atu3680 0.87 +0.9
737,976 - Atu3680 0.89 -0.7
738,013 + +0.1
738,035 + -0.1
738,076 - +1.6
738,091 - -0.2
738,312 - +0.3
738,322 - +1.5
738,407 + +0.4
738,415 - +0.3
738,415 - +0.4
738,456 - -0.0
738,472 - +0.2
738,483 + -0.5
738,488 + -0.2
738,534 + Atu3681 0.10 +0.5
738,610 + Atu3681 0.12 +0.2
738,610 + Atu3681 0.12 +0.3
738,610 + Atu3681 0.12 -0.2
738,618 - Atu3681 0.12 +0.3
738,618 - Atu3681 0.12 -0.5
738,623 - Atu3681 0.12 +0.3
738,719 - Atu3681 0.14 +0.0
738,812 + Atu3681 0.17 +0.6
738,812 + Atu3681 0.17 +0.1
738,825 - Atu3681 0.17 +0.5
738,831 + Atu3681 0.17 -0.2
738,836 + Atu3681 0.17 -1.3
738,954 + Atu3681 0.20 +0.2
738,964 + Atu3681 0.20 +1.6
738,983 + Atu3681 0.20 +0.6
739,028 - Atu3681 0.21 +0.2
739,050 + Atu3681 0.22 +0.9
739,079 - Atu3681 0.23 -0.1
739,098 + Atu3681 0.23 +2.4
739,106 - Atu3681 0.23 -1.2
739,186 + Atu3681 0.25 +0.1
739,290 + Atu3681 0.27 +0.7
739,298 - Atu3681 0.28 +0.3
739,313 + Atu3681 0.28 +0.2
739,313 + Atu3681 0.28 +0.2
739,313 + Atu3681 0.28 -0.3
739,321 - Atu3681 0.28 -0.3
739,321 - Atu3681 0.28 -0.6
739,321 - Atu3681 0.28 -0.9
739,321 - Atu3681 0.28 -0.3
739,324 + Atu3681 0.28 +0.1
739,467 - Atu3681 0.31 +0.8
739,633 - Atu3681 0.35 -0.1
739,666 - Atu3681 0.36 -0.2
739,748 - Atu3681 0.38 +0.2
739,752 - Atu3681 0.38 -0.3
739,828 - Atu3681 0.39 +0.2
739,894 - Atu3681 0.41 -0.8
739,894 - Atu3681 0.41 -0.1
739,903 + Atu3681 0.41 +2.4
739,918 + Atu3681 0.42 +0.7
739,918 + Atu3681 0.42 +0.4
739,920 + Atu3681 0.42 +1.1
739,920 + Atu3681 0.42 -0.3
739,920 + Atu3681 0.42 -0.7
739,926 - Atu3681 0.42 -1.0
739,926 - Atu3681 0.42 +1.3
739,926 - Atu3681 0.42 +0.6
739,951 - Atu3681 0.42 -1.2
740,080 - Atu3681 0.45 -0.1
740,087 + Atu3681 0.45 +0.5
740,111 + Atu3681 0.46 -0.8
740,113 + Atu3681 0.46 +0.7
740,130 + Atu3681 0.46 -0.3
740,130 + Atu3681 0.46 +0.3
740,224 + Atu3681 0.48 -0.3
740,224 + Atu3681 0.48 +1.0
740,232 - Atu3681 0.49 +0.2
740,280 + Atu3681 0.50 +0.5
740,360 - Atu3681 0.51 +0.5
740,366 - Atu3681 0.52 +0.4
740,477 - Atu3681 0.54 +0.2
740,489 - Atu3681 0.54 +0.1
740,498 - Atu3681 0.55 -0.9
740,537 - Atu3681 0.55 -0.1
740,549 - Atu3681 0.56 +0.6
740,581 - Atu3681 0.56 +0.9
740,729 + Atu3681 0.60 +0.7
740,732 + Atu3681 0.60 +0.3
740,869 + Atu3681 0.63 +0.1
740,877 - Atu3681 0.63 +0.4
740,890 + Atu3681 0.63 -0.4
740,903 + Atu3681 0.64 -0.1
740,916 + Atu3681 0.64 +1.0
740,924 - Atu3681 0.64 -0.1
740,940 + Atu3681 0.65 +0.3
740,948 - Atu3681 0.65 -1.0
741,009 - Atu3681 0.66 +0.2
741,024 + Atu3681 0.66 +0.8
741,085 + Atu3681 0.68 +0.0
741,109 + Atu3681 0.68 +0.3
741,201 + Atu3681 0.70 -0.3
741,238 - Atu3681 0.71 -0.6
741,268 + Atu3681 0.72 +0.9
741,276 - Atu3681 0.72 +1.1
741,366 + Atu3681 0.74 +0.9
741,374 - Atu3681 0.74 -0.5
741,374 - Atu3681 0.74 -0.1
741,374 - Atu3681 0.74 +0.3
741,385 + Atu3681 0.75 -0.3
741,498 + Atu3681 0.77 +0.4
741,575 - Atu3681 0.79 -1.8
741,575 - Atu3681 0.79 +0.8
741,624 - Atu3681 0.80 +0.1
741,865 + Atu3681 0.85 +0.1
741,873 + Atu3681 0.86 +0.0
741,906 + Atu3681 0.86 +0.2
741,914 + Atu3681 0.87 +0.8
742,088 - +0.1
742,253 - +0.8
742,312 + +0.2
742,384 - -0.2
742,468 - +0.3
742,544 - -0.1
742,595 - +0.0
742,597 + +1.0
742,645 + -0.2
742,645 + -0.3
742,653 - +0.4
742,653 - -0.6
742,653 - +0.5
742,713 - -0.5
742,749 - -1.0
742,921 + +0.2
742,929 - -1.3
742,960 - -0.3
743,031 + -0.9
743,055 + -0.6
743,082 + +0.2
743,102 + -1.1
743,105 - -1.5
743,105 - +0.1
743,105 - +0.5
743,116 - -0.3
743,168 + -0.5
743,228 + Atu3682 0.10 +0.1
743,242 + Atu3682 0.10 -0.0
743,242 + Atu3682 0.10 +0.2
743,250 + Atu3682 0.10 +1.6
743,250 - Atu3682 0.10 +0.9
743,250 - Atu3682 0.10 -0.4
743,327 + Atu3682 0.11 +0.8
743,333 - Atu3682 0.11 +0.5
743,345 - Atu3682 0.12 +0.5
743,445 - Atu3682 0.13 -0.6
743,468 + Atu3682 0.13 +3.1

Or see this region's nucleotide sequence