Experiment: Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Cocuture=C58C1OD2.0
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3631 and Atu3632 overlap by 4 nucleotides Atu3632 and Atu3633 are separated by 223 nucleotides
Atu3631: Atu3631 - hypothetical protein, at 683,199 to 684,338
Atu3631
Atu3632: Atu3632 - hypothetical protein, at 684,335 to 684,571
Atu3632
Atu3633: Atu3633 - hypothetical protein, at 684,795 to 685,919
Atu3633
Position (kb) 684
685 Strain fitness (log2 ratio) -1
0
1
2 at 683.580 kb on - strand, within Atu3631 at 683.609 kb on - strand, within Atu3631 at 683.615 kb on - strand, within Atu3631 at 683.646 kb on - strand, within Atu3631 at 683.648 kb on + strand, within Atu3631 at 683.782 kb on + strand, within Atu3631 at 683.911 kb on + strand, within Atu3631 at 683.915 kb on - strand, within Atu3631 at 684.182 kb on - strand, within Atu3631 at 684.213 kb on + strand, within Atu3631 at 684.221 kb on - strand, within Atu3631 at 684.236 kb on + strand at 684.236 kb on + strand at 684.236 kb on + strand at 684.236 kb on + strand at 684.540 kb on - strand, within Atu3632 at 684.540 kb on - strand, within Atu3632 at 684.540 kb on - strand, within Atu3632 at 684.666 kb on + strand at 684.767 kb on + strand at 684.793 kb on + strand at 684.801 kb on - strand at 684.862 kb on - strand at 684.881 kb on - strand at 684.884 kb on - strand at 684.964 kb on - strand, within Atu3633 at 685.015 kb on + strand, within Atu3633 at 685.097 kb on - strand, within Atu3633 at 685.204 kb on - strand, within Atu3633 at 685.256 kb on - strand, within Atu3633 at 685.438 kb on + strand, within Atu3633 at 685.450 kb on - strand, within Atu3633
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Cocuture=C58C1OD2.0 remove 683,580 - Atu3631 0.33 -0.1 683,609 - Atu3631 0.36 -0.5 683,615 - Atu3631 0.36 -0.4 683,646 - Atu3631 0.39 +0.1 683,648 + Atu3631 0.39 -1.1 683,782 + Atu3631 0.51 -0.2 683,911 + Atu3631 0.62 +0.1 683,915 - Atu3631 0.63 -0.4 684,182 - Atu3631 0.86 +0.4 684,213 + Atu3631 0.89 -1.6 684,221 - Atu3631 0.90 +0.1 684,236 + -0.7 684,236 + +0.8 684,236 + +0.6 684,236 + -0.8 684,540 - Atu3632 0.86 +2.2 684,540 - Atu3632 0.86 -0.1 684,540 - Atu3632 0.86 +0.3 684,666 + +0.0 684,767 + -0.6 684,793 + +1.1 684,801 - -0.3 684,862 - +0.2 684,881 - +0.6 684,884 - +0.4 684,964 - Atu3633 0.15 -0.2 685,015 + Atu3633 0.20 +0.6 685,097 - Atu3633 0.27 +1.0 685,204 - Atu3633 0.36 -0.9 685,256 - Atu3633 0.41 +1.1 685,438 + Atu3633 0.57 -0.1 685,450 - Atu3633 0.58 +0.3
Or see this region's nucleotide sequence