Experiment: Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Cocuture=C58C1OD2.0
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3433 and Atu3434 are separated by 269 nucleotides Atu3434 and Atu3435 overlap by 4 nucleotides Atu3435 and Atu3436 overlap by 4 nucleotides
Atu3433: Atu3433 - oligopeptide ABC transporter substrate-binding protein, at 478,878 to 480,485
Atu3433
Atu3434: Atu3434 - oligopeptide ABC transporter permease, at 480,755 to 481,744
Atu3434
Atu3435: Atu3435 - oligopeptide ABC transporter permease, at 481,741 to 482,736
Atu3435
Atu3436: Atu3436 - oligopeptide ABC transporter ATPase, at 482,733 to 483,731
Atu3436
Position (kb) 480
481
482 Strain fitness (log2 ratio) -1
0
1 at 479.825 kb on + strand, within Atu3433 at 479.881 kb on - strand, within Atu3433 at 479.887 kb on - strand, within Atu3433 at 479.902 kb on - strand, within Atu3433 at 479.909 kb on - strand, within Atu3433 at 479.917 kb on - strand, within Atu3433 at 480.013 kb on + strand, within Atu3433 at 480.069 kb on + strand, within Atu3433 at 480.141 kb on + strand, within Atu3433 at 480.149 kb on - strand, within Atu3433 at 480.149 kb on - strand, within Atu3433 at 480.149 kb on - strand, within Atu3433 at 480.164 kb on + strand, within Atu3433 at 480.174 kb on + strand, within Atu3433 at 480.190 kb on + strand, within Atu3433 at 480.190 kb on + strand, within Atu3433 at 480.198 kb on - strand, within Atu3433 at 480.277 kb on + strand, within Atu3433 at 480.306 kb on + strand, within Atu3433 at 480.325 kb on + strand at 480.344 kb on + strand at 480.990 kb on + strand, within Atu3434 at 481.046 kb on - strand, within Atu3434 at 481.089 kb on - strand, within Atu3434 at 481.131 kb on - strand, within Atu3434 at 481.200 kb on - strand, within Atu3434 at 481.228 kb on - strand, within Atu3434 at 481.281 kb on + strand, within Atu3434 at 481.296 kb on + strand, within Atu3434 at 481.343 kb on - strand, within Atu3434 at 481.388 kb on + strand, within Atu3434 at 481.396 kb on - strand, within Atu3434 at 481.482 kb on + strand, within Atu3434 at 481.495 kb on - strand, within Atu3434 at 481.650 kb on - strand at 481.763 kb on - strand at 481.773 kb on - strand at 481.800 kb on - strand at 481.969 kb on - strand, within Atu3435 at 481.990 kb on + strand, within Atu3435 at 482.095 kb on + strand, within Atu3435 at 482.103 kb on - strand, within Atu3435 at 482.103 kb on - strand, within Atu3435 at 482.109 kb on + strand, within Atu3435 at 482.302 kb on + strand, within Atu3435 at 482.329 kb on - strand, within Atu3435 at 482.607 kb on + strand, within Atu3435 at 482.617 kb on + strand, within Atu3435 at 482.625 kb on - strand, within Atu3435 at 482.630 kb on - strand, within Atu3435 at 482.703 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Cocuture=C58C1OD2.0 remove 479,825 + Atu3433 0.59 +0.3 479,881 - Atu3433 0.62 +0.2 479,887 - Atu3433 0.63 -1.6 479,902 - Atu3433 0.64 -0.6 479,909 - Atu3433 0.64 +0.4 479,917 - Atu3433 0.65 -1.6 480,013 + Atu3433 0.71 +0.2 480,069 + Atu3433 0.74 -0.9 480,141 + Atu3433 0.79 +1.5 480,149 - Atu3433 0.79 +1.5 480,149 - Atu3433 0.79 -0.3 480,149 - Atu3433 0.79 -0.6 480,164 + Atu3433 0.80 +0.5 480,174 + Atu3433 0.81 -0.1 480,190 + Atu3433 0.82 -1.0 480,190 + Atu3433 0.82 +0.1 480,198 - Atu3433 0.82 -0.4 480,277 + Atu3433 0.87 +0.1 480,306 + Atu3433 0.89 +0.3 480,325 + -0.0 480,344 + +0.2 480,990 + Atu3434 0.24 +0.2 481,046 - Atu3434 0.29 +0.0 481,089 - Atu3434 0.34 +0.9 481,131 - Atu3434 0.38 +0.4 481,200 - Atu3434 0.45 +0.6 481,228 - Atu3434 0.48 +0.5 481,281 + Atu3434 0.53 +0.2 481,296 + Atu3434 0.55 +0.8 481,343 - Atu3434 0.59 -1.2 481,388 + Atu3434 0.64 -0.2 481,396 - Atu3434 0.65 -0.6 481,482 + Atu3434 0.73 +0.5 481,495 - Atu3434 0.75 +0.5 481,650 - +0.1 481,763 - +0.5 481,773 - +0.1 481,800 - -1.0 481,969 - Atu3435 0.23 +0.0 481,990 + Atu3435 0.25 -1.0 482,095 + Atu3435 0.36 +0.9 482,103 - Atu3435 0.36 +0.2 482,103 - Atu3435 0.36 +0.5 482,109 + Atu3435 0.37 +0.4 482,302 + Atu3435 0.56 +1.0 482,329 - Atu3435 0.59 +0.4 482,607 + Atu3435 0.87 -0.1 482,617 + Atu3435 0.88 +0.6 482,625 - Atu3435 0.89 -1.1 482,630 - Atu3435 0.89 +0.0 482,703 + -0.3
Or see this region's nucleotide sequence