Experiment: Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Cocuture=C58C1OD2.0
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3141 and Atu3142 overlap by 4 nucleotides Atu3142 and Atu3143 are separated by 138 nucleotides Atu3143 and Atu3144 are separated by 89 nucleotides Atu3144 and Atu3145 are separated by 50 nucleotides
Atu3141: Atu3141 - 2-deoxy-D-gluconate 3-dehydrogenase, at 149,169 to 149,912
Atu3141
Atu3142: Atu3142 - 5-keto-4-deoxyuronate isomerase, at 149,909 to 150,733
Atu3142
Atu3143: Atu3143 - hypothetical protein, at 150,872 to 151,669
Atu3143
Atu3144: Atu3144 - GntR family transcriptional regulator, at 151,759 to 152,496
Atu3144
Atu3145: Atu3145 - pectin degradation protein, at 152,547 to 152,864
Atu3145
Position (kb) 150
151
152 Strain fitness (log2 ratio) -1
0
1
2 at 149.920 kb on - strand at 149.964 kb on - strand at 149.978 kb on + strand at 150.173 kb on + strand, within Atu3142 at 150.173 kb on + strand, within Atu3142 at 150.201 kb on + strand, within Atu3142 at 150.201 kb on + strand, within Atu3142 at 150.201 kb on + strand, within Atu3142 at 150.209 kb on - strand, within Atu3142 at 150.209 kb on - strand, within Atu3142 at 150.214 kb on - strand, within Atu3142 at 150.261 kb on - strand, within Atu3142 at 150.291 kb on + strand, within Atu3142 at 150.325 kb on - strand, within Atu3142 at 150.351 kb on + strand, within Atu3142 at 150.359 kb on - strand, within Atu3142 at 150.359 kb on - strand, within Atu3142 at 150.363 kb on + strand, within Atu3142 at 150.373 kb on + strand, within Atu3142 at 150.381 kb on - strand, within Atu3142 at 150.422 kb on - strand, within Atu3142 at 150.564 kb on + strand, within Atu3142 at 150.564 kb on + strand, within Atu3142 at 150.572 kb on - strand, within Atu3142 at 150.572 kb on - strand, within Atu3142 at 150.589 kb on - strand, within Atu3142 at 150.604 kb on - strand, within Atu3142 at 150.606 kb on + strand, within Atu3142 at 150.606 kb on + strand, within Atu3142 at 150.606 kb on + strand, within Atu3142 at 150.614 kb on - strand, within Atu3142 at 150.614 kb on - strand, within Atu3142 at 150.614 kb on - strand, within Atu3142 at 150.614 kb on - strand, within Atu3142 at 150.630 kb on + strand, within Atu3142 at 150.675 kb on - strand at 150.817 kb on + strand at 150.817 kb on - strand at 150.835 kb on - strand at 150.835 kb on - strand at 150.837 kb on + strand at 150.930 kb on + strand at 150.970 kb on + strand, within Atu3143 at 150.992 kb on - strand, within Atu3143 at 151.065 kb on + strand, within Atu3143 at 151.073 kb on - strand, within Atu3143 at 151.128 kb on - strand, within Atu3143 at 151.164 kb on + strand, within Atu3143 at 151.172 kb on - strand, within Atu3143 at 151.223 kb on - strand, within Atu3143 at 151.247 kb on - strand, within Atu3143 at 151.337 kb on - strand, within Atu3143 at 151.454 kb on + strand, within Atu3143 at 151.546 kb on + strand, within Atu3143 at 151.546 kb on + strand, within Atu3143 at 151.554 kb on - strand, within Atu3143 at 151.570 kb on + strand, within Atu3143 at 151.621 kb on + strand at 151.756 kb on - strand at 151.775 kb on + strand at 151.789 kb on + strand at 151.797 kb on + strand at 151.800 kb on - strand at 151.805 kb on - strand at 151.950 kb on + strand, within Atu3144 at 151.965 kb on + strand, within Atu3144 at 152.044 kb on - strand, within Atu3144 at 152.207 kb on - strand, within Atu3144 at 152.404 kb on - strand, within Atu3144 at 152.422 kb on + strand, within Atu3144 at 152.445 kb on + strand at 152.476 kb on + strand at 152.523 kb on + strand at 152.639 kb on - strand, within Atu3145
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Cocuture=C58C1OD2.0 remove 149,920 - +2.2 149,964 - -0.7 149,978 + +0.5 150,173 + Atu3142 0.32 +0.5 150,173 + Atu3142 0.32 -0.6 150,201 + Atu3142 0.35 +0.0 150,201 + Atu3142 0.35 +0.0 150,201 + Atu3142 0.35 -0.5 150,209 - Atu3142 0.36 +0.3 150,209 - Atu3142 0.36 +0.5 150,214 - Atu3142 0.37 -0.4 150,261 - Atu3142 0.43 +0.6 150,291 + Atu3142 0.46 +1.6 150,325 - Atu3142 0.50 +0.2 150,351 + Atu3142 0.54 -0.0 150,359 - Atu3142 0.55 +1.2 150,359 - Atu3142 0.55 +0.2 150,363 + Atu3142 0.55 -0.5 150,373 + Atu3142 0.56 +0.0 150,381 - Atu3142 0.57 +0.0 150,422 - Atu3142 0.62 +1.5 150,564 + Atu3142 0.79 -0.2 150,564 + Atu3142 0.79 +0.8 150,572 - Atu3142 0.80 +0.2 150,572 - Atu3142 0.80 -0.3 150,589 - Atu3142 0.82 +1.9 150,604 - Atu3142 0.84 +0.1 150,606 + Atu3142 0.84 -0.4 150,606 + Atu3142 0.84 -0.1 150,606 + Atu3142 0.84 -0.4 150,614 - Atu3142 0.85 +0.3 150,614 - Atu3142 0.85 -0.4 150,614 - Atu3142 0.85 -0.5 150,614 - Atu3142 0.85 +0.9 150,630 + Atu3142 0.87 -0.1 150,675 - -0.2 150,817 + +0.3 150,817 - +0.4 150,835 - -0.0 150,835 - -0.6 150,837 + -0.9 150,930 + +0.4 150,970 + Atu3143 0.12 +0.1 150,992 - Atu3143 0.15 -0.3 151,065 + Atu3143 0.24 +0.0 151,073 - Atu3143 0.25 +0.7 151,128 - Atu3143 0.32 -0.1 151,164 + Atu3143 0.37 +1.1 151,172 - Atu3143 0.38 -0.6 151,223 - Atu3143 0.44 +0.1 151,247 - Atu3143 0.47 +0.3 151,337 - Atu3143 0.58 -1.3 151,454 + Atu3143 0.73 -0.6 151,546 + Atu3143 0.84 -0.6 151,546 + Atu3143 0.84 -1.1 151,554 - Atu3143 0.85 +1.1 151,570 + Atu3143 0.87 +1.1 151,621 + +0.2 151,756 - +0.8 151,775 + -0.2 151,789 + -1.7 151,797 + -1.7 151,800 - -0.6 151,805 - +0.3 151,950 + Atu3144 0.26 -0.3 151,965 + Atu3144 0.28 -0.0 152,044 - Atu3144 0.39 -0.8 152,207 - Atu3144 0.61 -0.3 152,404 - Atu3144 0.87 -0.6 152,422 + Atu3144 0.90 -0.8 152,445 + +0.1 152,476 + -0.3 152,523 + +0.7 152,639 - Atu3145 0.29 +0.5
Or see this region's nucleotide sequence