Strain Fitness in Agrobacterium fabrum C58 around Atu2376

Experiment: Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Cocuture=C58C1OD2.0

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Cocuture=C58C1OD2.0
2,348,025	+				+0.2
2,348,025	+				-0.4
2,348,045	+				+0.5
2,348,053	-				-1.0
2,348,157	-		Atu2375	0.15	-0.7
2,348,216	+		Atu2375	0.22	-0.5
2,348,416	+		Atu2375	0.47	-0.3
2,348,424	-		Atu2375	0.48	-1.1
2,348,424	-		Atu2375	0.48	-0.3
2,348,458	+		Atu2375	0.52	-0.4
2,348,543	-		Atu2375	0.63	+0.4
2,348,592	-		Atu2375	0.69	-1.4
2,348,632	-		Atu2375	0.74	-0.8
2,348,709	-		Atu2375	0.84	-2.4
2,348,737	+		Atu2375	0.87	-1.2
2,348,775	+				+1.2
2,348,783	-				-0.3
2,348,810	+				-0.2
2,348,810	+				-2.3
2,348,810	+				-0.4
2,348,810	+				+0.1
2,348,810	+				-0.2
2,348,810	+				+0.3
2,348,810	+				+1.8
2,348,810	+				+0.5
2,348,810	+				+0.1
2,348,810	+				-0.6
2,348,813	-				+0.6
2,348,818	-				+0.3
2,348,818	-				-0.4
2,348,818	-				-0.8
2,348,818	-				-0.0
2,348,818	-				-0.5
2,348,818	-				-0.4
2,348,818	-				-1.1
2,348,818	-				-0.8
2,348,850	+				-0.8
2,348,850	+				+0.6
2,348,858	-				-0.2
2,348,858	-				-0.1
2,348,858	-				+1.9
2,348,867	+				-0.3
2,348,913	+				+0.2
2,348,921	-				+0.1
2,348,923	-				-0.4
2,349,000	-		Atu2376	0.15	-1.8
2,349,077	+		Atu2376	0.41	-0.1
2,349,245	-				+0.4
2,349,267	+				+0.2
2,349,271	+				-0.7
2,349,324	+				-0.4
2,349,449	-				+0.5
2,349,449	-				-0.5
2,349,617	+		Atu2377	0.21	+0.3
2,349,713	-		Atu2377	0.28	+0.4
2,349,713	-		Atu2377	0.28	-1.5
2,349,713	-		Atu2377	0.28	-0.0
2,349,805	+		Atu2377	0.35	-0.6
2,349,805	+		Atu2377	0.35	-1.2
2,349,813	-		Atu2377	0.35	+0.0
2,349,813	-		Atu2377	0.35	-0.7
2,349,813	-		Atu2377	0.35	-2.0
2,349,836	-		Atu2377	0.37	-0.7
2,349,849	+		Atu2377	0.38	-0.8
2,349,852	-		Atu2377	0.38	+0.4
2,349,909	+		Atu2377	0.42	+1.2
2,349,909	+		Atu2377	0.42	-0.3
2,349,971	-		Atu2377	0.47	-0.2
2,350,167	-		Atu2377	0.61	-2.0
2,350,188	+		Atu2377	0.62	-0.7
2,350,203	-		Atu2377	0.63	+1.3
2,350,238	-		Atu2377	0.66	-0.7