Strain Fitness in Agrobacterium fabrum C58 around Atu1387

Experiment: Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Cocuture=C58C1OD2.0

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Cocuture=C58C1OD2.0
1,381,300	-				+0.3
1,381,357	-				-1.4
1,381,372	-				+0.1
1,381,372	-				+0.2
1,381,431	-				-0.4
1,381,739	-		Atu1387	0.36	-1.5
1,381,861	-		Atu1387	0.53	+0.4
1,382,038	-		Atu1387	0.78	+2.2
1,382,257	-				-0.9
1,382,492	-		Atu1388	0.37	+0.7
1,382,532	+		Atu1388	0.42	+0.3
1,382,591	+		Atu1388	0.49	-1.2
1,382,591	+		Atu1388	0.49	+0.1
1,382,630	+		Atu1388	0.54	-0.3
1,382,644	-		Atu1388	0.56	-0.2
1,382,668	-		Atu1388	0.59	-1.2
1,382,678	-		Atu1388	0.60	-0.4
1,382,678	-		Atu1388	0.60	+0.3
1,382,751	+		Atu1388	0.70	-0.2
1,382,769	+		Atu1388	0.72	-0.0
1,382,930	-				-2.6
1,383,040	+				+3.1