Experiment: Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Cocuture=C58C1OD2.0
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu6167 and Atu6168 overlap by 1 nucleotides Atu6168 and Atu6169 overlap by 1 nucleotides Atu6169 and Atu6170 overlap by 1 nucleotides Atu6170 and Atu6171 are separated by 16 nucleotides Atu6171 and Atu6172 are separated by 100 nucleotides
Atu6167: Atu6167 - component of type IV secretion system, at 183,877 to 184,614
Atu6167
Atu6168: Atu6168 - component of type IV secretion system, pilin subunit, at 184,614 to 184,979
Atu6168
Atu6169: Atu6169 - component of type IV secretion system, at 184,979 to 185,305
Atu6169
Atu6170: Atu6170 - component of type IV secretion system, at 185,305 to 187,674
Atu6170
Atu6171: Atu6171 - component of type IV secretion system, at 187,691 to 188,353
Atu6171
Atu6172: Atu6172 - component of type IV secretion system, at 188,454 to 189,341
Atu6172
Position (kb) 185
186
187
188 Strain fitness (log2 ratio) -2
-1
0
1
2 at 184.355 kb on + strand, within Atu6167 at 184.355 kb on + strand, within Atu6167 at 184.391 kb on + strand, within Atu6167 at 184.418 kb on - strand, within Atu6167 at 184.454 kb on - strand, within Atu6167 at 184.488 kb on - strand, within Atu6167 at 184.503 kb on + strand, within Atu6167 at 184.503 kb on + strand, within Atu6167 at 184.511 kb on - strand, within Atu6167 at 184.578 kb on + strand at 184.676 kb on + strand, within Atu6168 at 184.679 kb on - strand, within Atu6168 at 184.679 kb on - strand, within Atu6168 at 184.683 kb on + strand, within Atu6168 at 184.683 kb on + strand, within Atu6168 at 184.683 kb on + strand, within Atu6168 at 184.709 kb on - strand, within Atu6168 at 184.711 kb on + strand, within Atu6168 at 184.711 kb on + strand, within Atu6168 at 184.711 kb on + strand, within Atu6168 at 184.711 kb on + strand, within Atu6168 at 184.719 kb on - strand, within Atu6168 at 184.719 kb on - strand, within Atu6168 at 184.719 kb on - strand, within Atu6168 at 184.722 kb on - strand, within Atu6168 at 184.735 kb on + strand, within Atu6168 at 184.776 kb on + strand, within Atu6168 at 184.784 kb on - strand, within Atu6168 at 184.791 kb on - strand, within Atu6168 at 184.807 kb on + strand, within Atu6168 at 184.807 kb on + strand, within Atu6168 at 184.842 kb on + strand, within Atu6168 at 184.964 kb on + strand at 184.972 kb on - strand at 185.006 kb on - strand at 185.116 kb on + strand, within Atu6169 at 185.129 kb on + strand, within Atu6169 at 185.129 kb on + strand, within Atu6169 at 185.221 kb on - strand, within Atu6169 at 185.221 kb on - strand, within Atu6169 at 185.236 kb on + strand, within Atu6169 at 185.236 kb on + strand, within Atu6169 at 185.247 kb on + strand, within Atu6169 at 185.255 kb on - strand, within Atu6169 at 185.295 kb on - strand at 185.307 kb on + strand at 185.326 kb on + strand at 185.334 kb on - strand at 185.338 kb on + strand at 185.341 kb on - strand at 185.341 kb on - strand at 185.341 kb on - strand at 185.346 kb on - strand at 185.362 kb on + strand at 185.362 kb on - strand at 185.377 kb on - strand at 185.384 kb on - strand at 185.427 kb on + strand at 185.543 kb on - strand, within Atu6170 at 185.620 kb on - strand, within Atu6170 at 185.653 kb on + strand, within Atu6170 at 185.660 kb on + strand, within Atu6170 at 185.668 kb on - strand, within Atu6170 at 185.670 kb on + strand, within Atu6170 at 185.760 kb on - strand, within Atu6170 at 185.760 kb on - strand, within Atu6170 at 185.767 kb on - strand, within Atu6170 at 185.774 kb on - strand, within Atu6170 at 185.822 kb on + strand, within Atu6170 at 185.862 kb on + strand, within Atu6170 at 185.862 kb on + strand, within Atu6170 at 185.862 kb on + strand, within Atu6170 at 185.862 kb on + strand, within Atu6170 at 185.862 kb on + strand, within Atu6170 at 185.863 kb on - strand, within Atu6170 at 185.870 kb on - strand, within Atu6170 at 185.872 kb on + strand, within Atu6170 at 185.883 kb on + strand, within Atu6170 at 185.893 kb on + strand, within Atu6170 at 185.915 kb on - strand, within Atu6170 at 185.935 kb on + strand, within Atu6170 at 185.940 kb on + strand, within Atu6170 at 185.948 kb on - strand, within Atu6170 at 185.948 kb on - strand, within Atu6170 at 185.948 kb on - strand, within Atu6170 at 185.948 kb on - strand, within Atu6170 at 185.948 kb on - strand, within Atu6170 at 185.985 kb on - strand, within Atu6170 at 186.067 kb on + strand, within Atu6170 at 186.193 kb on + strand, within Atu6170 at 186.201 kb on - strand, within Atu6170 at 186.306 kb on + strand, within Atu6170 at 186.350 kb on - strand, within Atu6170 at 186.366 kb on + strand, within Atu6170 at 186.366 kb on - strand, within Atu6170 at 186.374 kb on - strand, within Atu6170 at 186.410 kb on + strand, within Atu6170 at 186.460 kb on + strand, within Atu6170 at 186.460 kb on + strand, within Atu6170 at 186.502 kb on + strand, within Atu6170 at 186.502 kb on + strand, within Atu6170 at 186.510 kb on - strand, within Atu6170 at 186.510 kb on - strand, within Atu6170 at 186.510 kb on - strand, within Atu6170 at 186.528 kb on + strand, within Atu6170 at 186.536 kb on - strand, within Atu6170 at 186.606 kb on + strand, within Atu6170 at 186.623 kb on - strand, within Atu6170 at 186.623 kb on - strand, within Atu6170 at 186.635 kb on + strand, within Atu6170 at 186.635 kb on + strand, within Atu6170 at 186.636 kb on - strand, within Atu6170 at 186.636 kb on - strand, within Atu6170 at 186.643 kb on - strand, within Atu6170 at 186.660 kb on + strand, within Atu6170 at 186.660 kb on + strand, within Atu6170 at 186.660 kb on + strand, within Atu6170 at 186.668 kb on - strand, within Atu6170 at 186.691 kb on - strand, within Atu6170 at 186.711 kb on - strand, within Atu6170 at 186.718 kb on - strand, within Atu6170 at 186.756 kb on + strand, within Atu6170 at 186.756 kb on + strand, within Atu6170 at 186.756 kb on + strand, within Atu6170 at 186.756 kb on + strand, within Atu6170 at 186.756 kb on + strand, within Atu6170 at 186.756 kb on + strand, within Atu6170 at 186.756 kb on + strand, within Atu6170 at 186.756 kb on + strand, within Atu6170 at 186.756 kb on + strand, within Atu6170 at 186.756 kb on + strand, within Atu6170 at 186.756 kb on + strand, within Atu6170 at 186.756 kb on + strand, within Atu6170 at 186.764 kb on - strand, within Atu6170 at 186.764 kb on - strand, within Atu6170 at 186.764 kb on - strand, within Atu6170 at 186.764 kb on - strand, within Atu6170 at 186.764 kb on - strand, within Atu6170 at 186.764 kb on - strand, within Atu6170 at 186.764 kb on - strand, within Atu6170 at 186.798 kb on + strand, within Atu6170 at 186.849 kb on + strand, within Atu6170 at 186.880 kb on - strand, within Atu6170 at 186.908 kb on - strand, within Atu6170 at 186.929 kb on - strand, within Atu6170 at 186.975 kb on + strand, within Atu6170 at 186.992 kb on - strand, within Atu6170 at 187.006 kb on + strand, within Atu6170 at 187.006 kb on - strand, within Atu6170 at 187.014 kb on - strand, within Atu6170 at 187.014 kb on - strand, within Atu6170 at 187.014 kb on - strand, within Atu6170 at 187.014 kb on - strand, within Atu6170 at 187.030 kb on + strand, within Atu6170 at 187.030 kb on + strand, within Atu6170 at 187.035 kb on + strand, within Atu6170 at 187.038 kb on - strand, within Atu6170 at 187.038 kb on - strand, within Atu6170 at 187.038 kb on - strand, within Atu6170 at 187.043 kb on - strand, within Atu6170 at 187.144 kb on + strand, within Atu6170 at 187.150 kb on + strand, within Atu6170 at 187.150 kb on + strand, within Atu6170 at 187.158 kb on - strand, within Atu6170 at 187.182 kb on - strand, within Atu6170 at 187.379 kb on - strand, within Atu6170 at 187.405 kb on + strand, within Atu6170 at 187.453 kb on + strand at 187.473 kb on - strand at 187.473 kb on - strand at 187.482 kb on - strand at 187.496 kb on - strand at 187.520 kb on + strand at 187.569 kb on + strand at 187.569 kb on + strand at 187.569 kb on + strand at 187.577 kb on - strand at 187.577 kb on - strand at 187.594 kb on - strand at 187.606 kb on + strand at 187.606 kb on + strand at 187.606 kb on + strand at 187.606 kb on + strand at 187.614 kb on - strand at 187.614 kb on - strand at 187.617 kb on + strand at 187.622 kb on + strand at 187.681 kb on - strand at 187.705 kb on + strand at 187.731 kb on + strand at 187.731 kb on + strand at 187.818 kb on - strand, within Atu6171 at 187.839 kb on + strand, within Atu6171 at 187.847 kb on - strand, within Atu6171 at 187.847 kb on - strand, within Atu6171 at 187.864 kb on - strand, within Atu6171 at 187.892 kb on + strand, within Atu6171 at 188.026 kb on - strand, within Atu6171 at 188.036 kb on + strand, within Atu6171 at 188.044 kb on - strand, within Atu6171 at 188.095 kb on - strand, within Atu6171 at 188.103 kb on - strand, within Atu6171 at 188.136 kb on + strand, within Atu6171 at 188.229 kb on + strand, within Atu6171 at 188.269 kb on + strand, within Atu6171 at 188.277 kb on - strand, within Atu6171 at 188.305 kb on + strand at 188.334 kb on + strand at 188.348 kb on + strand at 188.356 kb on - strand at 188.356 kb on - strand at 188.374 kb on + strand at 188.379 kb on + strand at 188.444 kb on + strand at 188.452 kb on - strand at 188.452 kb on - strand at 188.485 kb on - strand at 188.528 kb on - strand at 188.542 kb on - strand at 188.548 kb on + strand, within Atu6172 at 188.584 kb on + strand, within Atu6172 at 188.586 kb on - strand, within Atu6172 at 188.594 kb on - strand, within Atu6172 at 188.598 kb on + strand, within Atu6172 at 188.598 kb on + strand, within Atu6172 at 188.607 kb on + strand, within Atu6172 at 188.662 kb on - strand, within Atu6172
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Cocuture=C58C1OD2.0 remove 184,355 + Atu6167 0.65 +1.0 184,355 + Atu6167 0.65 -1.2 184,391 + Atu6167 0.70 +0.2 184,418 - Atu6167 0.73 +0.2 184,454 - Atu6167 0.78 +0.1 184,488 - Atu6167 0.83 +0.1 184,503 + Atu6167 0.85 +0.3 184,503 + Atu6167 0.85 +0.6 184,511 - Atu6167 0.86 +0.6 184,578 + +0.3 184,676 + Atu6168 0.17 +1.3 184,679 - Atu6168 0.18 -0.1 184,679 - Atu6168 0.18 +1.2 184,683 + Atu6168 0.19 +0.4 184,683 + Atu6168 0.19 +0.3 184,683 + Atu6168 0.19 +0.3 184,709 - Atu6168 0.26 -0.1 184,711 + Atu6168 0.27 +0.2 184,711 + Atu6168 0.27 +0.1 184,711 + Atu6168 0.27 +1.6 184,711 + Atu6168 0.27 +0.2 184,719 - Atu6168 0.29 +0.3 184,719 - Atu6168 0.29 +0.2 184,719 - Atu6168 0.29 -1.5 184,722 - Atu6168 0.30 +0.3 184,735 + Atu6168 0.33 -2.1 184,776 + Atu6168 0.44 +0.1 184,784 - Atu6168 0.46 +0.3 184,791 - Atu6168 0.48 -0.1 184,807 + Atu6168 0.53 +0.5 184,807 + Atu6168 0.53 -0.1 184,842 + Atu6168 0.62 +0.5 184,964 + +0.4 184,972 - -0.1 185,006 - +0.1 185,116 + Atu6169 0.42 +0.7 185,129 + Atu6169 0.46 +1.8 185,129 + Atu6169 0.46 +0.3 185,221 - Atu6169 0.74 -0.1 185,221 - Atu6169 0.74 +0.0 185,236 + Atu6169 0.79 -0.1 185,236 + Atu6169 0.79 +0.3 185,247 + Atu6169 0.82 -0.1 185,255 - Atu6169 0.84 +0.6 185,295 - +0.6 185,307 + +0.5 185,326 + +0.4 185,334 - +0.7 185,338 + -1.3 185,341 - +0.7 185,341 - +0.8 185,341 - +0.5 185,346 - +0.7 185,362 + -0.2 185,362 - +1.0 185,377 - -0.3 185,384 - +0.3 185,427 + +1.2 185,543 - Atu6170 0.10 -0.1 185,620 - Atu6170 0.13 +2.5 185,653 + Atu6170 0.15 +0.3 185,660 + Atu6170 0.15 +0.8 185,668 - Atu6170 0.15 +0.7 185,670 + Atu6170 0.15 +0.4 185,760 - Atu6170 0.19 +1.7 185,760 - Atu6170 0.19 +0.7 185,767 - Atu6170 0.19 -0.3 185,774 - Atu6170 0.20 -0.1 185,822 + Atu6170 0.22 +1.4 185,862 + Atu6170 0.24 +0.2 185,862 + Atu6170 0.24 +0.3 185,862 + Atu6170 0.24 -0.1 185,862 + Atu6170 0.24 +0.3 185,862 + Atu6170 0.24 +0.5 185,863 - Atu6170 0.24 +0.2 185,870 - Atu6170 0.24 +0.4 185,872 + Atu6170 0.24 +0.3 185,883 + Atu6170 0.24 +0.3 185,893 + Atu6170 0.25 +0.4 185,915 - Atu6170 0.26 +0.1 185,935 + Atu6170 0.27 +0.4 185,940 + Atu6170 0.27 +0.3 185,948 - Atu6170 0.27 -0.0 185,948 - Atu6170 0.27 +0.2 185,948 - Atu6170 0.27 +0.3 185,948 - Atu6170 0.27 +0.4 185,948 - Atu6170 0.27 +0.7 185,985 - Atu6170 0.29 -0.4 186,067 + Atu6170 0.32 +0.5 186,193 + Atu6170 0.37 +0.1 186,201 - Atu6170 0.38 -0.1 186,306 + Atu6170 0.42 +0.4 186,350 - Atu6170 0.44 +0.8 186,366 + Atu6170 0.45 -0.7 186,366 - Atu6170 0.45 +0.7 186,374 - Atu6170 0.45 +0.4 186,410 + Atu6170 0.47 +0.1 186,460 + Atu6170 0.49 +0.6 186,460 + Atu6170 0.49 +0.2 186,502 + Atu6170 0.51 +0.5 186,502 + Atu6170 0.51 +0.3 186,510 - Atu6170 0.51 +0.2 186,510 - Atu6170 0.51 +0.7 186,510 - Atu6170 0.51 +0.1 186,528 + Atu6170 0.52 +0.3 186,536 - Atu6170 0.52 -2.1 186,606 + Atu6170 0.55 +0.2 186,623 - Atu6170 0.56 +0.3 186,623 - Atu6170 0.56 -1.7 186,635 + Atu6170 0.56 +0.4 186,635 + Atu6170 0.56 +0.4 186,636 - Atu6170 0.56 +0.1 186,636 - Atu6170 0.56 +0.3 186,643 - Atu6170 0.56 -0.9 186,660 + Atu6170 0.57 -0.1 186,660 + Atu6170 0.57 +0.5 186,660 + Atu6170 0.57 +0.6 186,668 - Atu6170 0.58 +0.4 186,691 - Atu6170 0.58 +0.0 186,711 - Atu6170 0.59 +0.5 186,718 - Atu6170 0.60 +0.7 186,756 + Atu6170 0.61 +0.5 186,756 + Atu6170 0.61 +0.4 186,756 + Atu6170 0.61 +0.7 186,756 + Atu6170 0.61 -0.3 186,756 + Atu6170 0.61 +0.2 186,756 + Atu6170 0.61 -0.4 186,756 + Atu6170 0.61 +0.2 186,756 + Atu6170 0.61 +0.6 186,756 + Atu6170 0.61 +0.4 186,756 + Atu6170 0.61 -2.4 186,756 + Atu6170 0.61 +0.1 186,756 + Atu6170 0.61 -0.0 186,764 - Atu6170 0.62 +0.5 186,764 - Atu6170 0.62 +0.3 186,764 - Atu6170 0.62 +0.3 186,764 - Atu6170 0.62 +0.1 186,764 - Atu6170 0.62 +0.6 186,764 - Atu6170 0.62 +0.2 186,764 - Atu6170 0.62 -0.5 186,798 + Atu6170 0.63 +0.5 186,849 + Atu6170 0.65 +0.1 186,880 - Atu6170 0.66 -1.9 186,908 - Atu6170 0.68 +0.3 186,929 - Atu6170 0.69 +0.7 186,975 + Atu6170 0.70 +0.7 186,992 - Atu6170 0.71 +0.5 187,006 + Atu6170 0.72 +0.5 187,006 - Atu6170 0.72 -0.3 187,014 - Atu6170 0.72 -0.4 187,014 - Atu6170 0.72 -0.3 187,014 - Atu6170 0.72 +0.1 187,014 - Atu6170 0.72 +0.7 187,030 + Atu6170 0.73 +0.5 187,030 + Atu6170 0.73 +0.2 187,035 + Atu6170 0.73 -0.1 187,038 - Atu6170 0.73 +0.2 187,038 - Atu6170 0.73 -0.7 187,038 - Atu6170 0.73 +1.8 187,043 - Atu6170 0.73 +0.7 187,144 + Atu6170 0.78 +0.6 187,150 + Atu6170 0.78 +0.2 187,150 + Atu6170 0.78 -0.3 187,158 - Atu6170 0.78 +0.4 187,182 - Atu6170 0.79 -0.7 187,379 - Atu6170 0.88 +0.5 187,405 + Atu6170 0.89 +0.1 187,453 + +0.2 187,473 - +0.5 187,473 - -0.1 187,482 - +1.7 187,496 - -0.0 187,520 + +1.3 187,569 + +0.4 187,569 + +0.1 187,569 + +0.1 187,577 - -1.3 187,577 - +0.1 187,594 - -0.0 187,606 + +0.3 187,606 + +0.2 187,606 + +0.2 187,606 + +0.4 187,614 - -1.1 187,614 - +0.3 187,617 + +0.5 187,622 + +0.6 187,681 - +0.1 187,705 + +0.2 187,731 + +1.0 187,731 + +0.4 187,818 - Atu6171 0.19 -0.7 187,839 + Atu6171 0.22 -0.2 187,847 - Atu6171 0.24 -0.7 187,847 - Atu6171 0.24 +1.4 187,864 - Atu6171 0.26 +0.4 187,892 + Atu6171 0.30 +0.3 188,026 - Atu6171 0.51 +0.2 188,036 + Atu6171 0.52 -1.6 188,044 - Atu6171 0.53 +0.1 188,095 - Atu6171 0.61 +0.4 188,103 - Atu6171 0.62 -0.9 188,136 + Atu6171 0.67 +0.3 188,229 + Atu6171 0.81 +0.3 188,269 + Atu6171 0.87 +1.0 188,277 - Atu6171 0.88 +1.7 188,305 + +0.1 188,334 + +0.7 188,348 + -0.0 188,356 - +0.1 188,356 - -0.2 188,374 + +0.1 188,379 + +1.0 188,444 + +1.0 188,452 - -0.2 188,452 - -0.7 188,485 - -0.1 188,528 - -0.4 188,542 - +0.8 188,548 + Atu6172 0.11 +0.3 188,584 + Atu6172 0.15 +0.9 188,586 - Atu6172 0.15 +0.9 188,594 - Atu6172 0.16 +0.1 188,598 + Atu6172 0.16 +0.3 188,598 + Atu6172 0.16 +0.7 188,607 + Atu6172 0.17 +0.2 188,662 - Atu6172 0.23 +0.5
Or see this region's nucleotide sequence