Experiment: Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Cocuture=C58C1OD2.0
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu6142 and Atu6143 overlap by 8 nucleotides Atu6143 and Atu6144 are separated by 15 nucleotides Atu6144 and Atu6145 overlap by 8 nucleotides Atu6145 and Atu6146 overlap by 1 nucleotides
Atu6142: Atu6142 - ABC transporter, membrane spanning protein (agrocinopine), at 161,875 to 162,801
Atu6142
Atu6143: Atu6143 - ABC transporter, membrane spanning protein (agrocinopine), at 162,794 to 163,654
Atu6143
Atu6144: Atu6144 - agrocinopine phosphodiesterase, at 163,670 to 164,470
Atu6144
Atu6145: Atu6145 - arabinose phosphate phosphatase, at 164,463 to 165,281
Atu6145
Atu6146: Atu6146 - conserved hypothetical protein, at 165,281 to 165,739
Atu6146
Position (kb) 163
164
165 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 162.711 kb on - strand at 162.726 kb on - strand at 162.771 kb on - strand at 162.851 kb on + strand at 162.861 kb on + strand at 162.861 kb on + strand at 162.869 kb on - strand at 162.921 kb on + strand, within Atu6143 at 162.921 kb on + strand, within Atu6143 at 162.921 kb on + strand, within Atu6143 at 162.922 kb on - strand, within Atu6143 at 162.946 kb on + strand, within Atu6143 at 162.947 kb on - strand, within Atu6143 at 162.947 kb on - strand, within Atu6143 at 162.949 kb on - strand, within Atu6143 at 162.953 kb on + strand, within Atu6143 at 162.953 kb on + strand, within Atu6143 at 162.961 kb on - strand, within Atu6143 at 163.002 kb on - strand, within Atu6143 at 163.007 kb on - strand, within Atu6143 at 163.009 kb on + strand, within Atu6143 at 163.041 kb on - strand, within Atu6143 at 163.054 kb on - strand, within Atu6143 at 163.054 kb on - strand, within Atu6143 at 163.079 kb on + strand, within Atu6143 at 163.164 kb on + strand, within Atu6143 at 163.197 kb on - strand, within Atu6143 at 163.219 kb on - strand, within Atu6143 at 163.316 kb on + strand, within Atu6143 at 163.324 kb on + strand, within Atu6143 at 163.333 kb on - strand, within Atu6143 at 163.353 kb on - strand, within Atu6143 at 163.388 kb on + strand, within Atu6143 at 163.396 kb on - strand, within Atu6143 at 163.396 kb on - strand, within Atu6143 at 163.458 kb on - strand, within Atu6143 at 163.469 kb on - strand, within Atu6143 at 163.503 kb on + strand, within Atu6143 at 163.503 kb on + strand, within Atu6143 at 163.508 kb on + strand, within Atu6143 at 163.562 kb on + strand, within Atu6143 at 163.691 kb on - strand at 163.856 kb on + strand, within Atu6144 at 163.857 kb on - strand, within Atu6144 at 163.864 kb on - strand, within Atu6144 at 163.876 kb on + strand, within Atu6144 at 163.905 kb on + strand, within Atu6144 at 163.924 kb on - strand, within Atu6144 at 163.942 kb on - strand, within Atu6144 at 163.952 kb on - strand, within Atu6144 at 163.975 kb on + strand, within Atu6144 at 163.975 kb on + strand, within Atu6144 at 163.975 kb on + strand, within Atu6144 at 163.975 kb on + strand, within Atu6144 at 163.975 kb on + strand, within Atu6144 at 163.983 kb on - strand, within Atu6144 at 163.983 kb on - strand, within Atu6144 at 163.983 kb on - strand, within Atu6144 at 163.998 kb on + strand, within Atu6144 at 164.087 kb on + strand, within Atu6144 at 164.090 kb on - strand, within Atu6144 at 164.095 kb on - strand, within Atu6144 at 164.097 kb on + strand, within Atu6144 at 164.097 kb on + strand, within Atu6144 at 164.097 kb on + strand, within Atu6144 at 164.105 kb on - strand, within Atu6144 at 164.105 kb on - strand, within Atu6144 at 164.105 kb on - strand, within Atu6144 at 164.105 kb on - strand, within Atu6144 at 164.180 kb on + strand, within Atu6144 at 164.271 kb on + strand, within Atu6144 at 164.296 kb on + strand, within Atu6144 at 164.353 kb on + strand, within Atu6144 at 164.361 kb on - strand, within Atu6144 at 164.445 kb on + strand at 164.447 kb on + strand at 164.469 kb on + strand at 164.477 kb on - strand at 164.477 kb on - strand at 164.550 kb on - strand, within Atu6145 at 164.550 kb on - strand, within Atu6145 at 164.569 kb on + strand, within Atu6145 at 164.576 kb on - strand, within Atu6145 at 164.596 kb on - strand, within Atu6145 at 164.596 kb on - strand, within Atu6145 at 164.725 kb on + strand, within Atu6145 at 164.775 kb on + strand, within Atu6145 at 164.783 kb on - strand, within Atu6145 at 164.783 kb on - strand, within Atu6145 at 164.788 kb on - strand, within Atu6145 at 164.891 kb on + strand, within Atu6145 at 164.899 kb on - strand, within Atu6145 at 164.906 kb on + strand, within Atu6145 at 164.932 kb on - strand, within Atu6145 at 164.986 kb on + strand, within Atu6145 at 164.994 kb on - strand, within Atu6145 at 165.056 kb on + strand, within Atu6145 at 165.062 kb on - strand, within Atu6145 at 165.085 kb on - strand, within Atu6145 at 165.155 kb on + strand, within Atu6145 at 165.159 kb on - strand, within Atu6145 at 165.163 kb on - strand, within Atu6145 at 165.179 kb on + strand, within Atu6145 at 165.179 kb on + strand, within Atu6145 at 165.183 kb on - strand, within Atu6145 at 165.187 kb on - strand, within Atu6145 at 165.221 kb on - strand at 165.242 kb on + strand at 165.291 kb on + strand at 165.299 kb on - strand at 165.299 kb on - strand at 165.322 kb on + strand at 165.330 kb on - strand, within Atu6146 at 165.332 kb on + strand, within Atu6146 at 165.340 kb on - strand, within Atu6146 at 165.366 kb on + strand, within Atu6146 at 165.423 kb on + strand, within Atu6146 at 165.429 kb on + strand, within Atu6146 at 165.439 kb on - strand, within Atu6146 at 165.449 kb on - strand, within Atu6146 at 165.449 kb on - strand, within Atu6146
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Cocuture=C58C1OD2.0 remove 162,711 - -1.2 162,726 - -1.3 162,771 - -0.9 162,851 + -0.7 162,861 + -0.5 162,861 + -0.8 162,869 - -0.7 162,921 + Atu6143 0.15 -1.0 162,921 + Atu6143 0.15 -1.0 162,921 + Atu6143 0.15 -2.1 162,922 - Atu6143 0.15 -0.5 162,946 + Atu6143 0.18 -1.6 162,947 - Atu6143 0.18 -0.9 162,947 - Atu6143 0.18 -0.2 162,949 - Atu6143 0.18 -0.1 162,953 + Atu6143 0.18 -1.3 162,953 + Atu6143 0.18 -0.6 162,961 - Atu6143 0.19 -0.7 163,002 - Atu6143 0.24 -1.8 163,007 - Atu6143 0.25 -0.5 163,009 + Atu6143 0.25 -1.7 163,041 - Atu6143 0.29 +0.3 163,054 - Atu6143 0.30 -0.8 163,054 - Atu6143 0.30 -0.8 163,079 + Atu6143 0.33 -2.2 163,164 + Atu6143 0.43 -0.5 163,197 - Atu6143 0.47 -0.3 163,219 - Atu6143 0.49 -1.9 163,316 + Atu6143 0.61 +0.1 163,324 + Atu6143 0.62 -0.7 163,333 - Atu6143 0.63 -0.8 163,353 - Atu6143 0.65 +0.9 163,388 + Atu6143 0.69 -1.2 163,396 - Atu6143 0.70 -0.5 163,396 - Atu6143 0.70 -0.9 163,458 - Atu6143 0.77 -0.2 163,469 - Atu6143 0.78 -0.8 163,503 + Atu6143 0.82 -0.8 163,503 + Atu6143 0.82 -1.1 163,508 + Atu6143 0.83 -0.8 163,562 + Atu6143 0.89 -1.4 163,691 - -1.9 163,856 + Atu6144 0.23 -1.6 163,857 - Atu6144 0.23 -2.2 163,864 - Atu6144 0.24 -1.5 163,876 + Atu6144 0.26 -1.3 163,905 + Atu6144 0.29 -2.2 163,924 - Atu6144 0.32 -2.1 163,942 - Atu6144 0.34 -1.9 163,952 - Atu6144 0.35 +1.0 163,975 + Atu6144 0.38 -1.9 163,975 + Atu6144 0.38 -1.5 163,975 + Atu6144 0.38 -1.7 163,975 + Atu6144 0.38 -0.0 163,975 + Atu6144 0.38 -1.6 163,983 - Atu6144 0.39 -0.4 163,983 - Atu6144 0.39 -3.1 163,983 - Atu6144 0.39 -1.2 163,998 + Atu6144 0.41 -1.5 164,087 + Atu6144 0.52 -2.8 164,090 - Atu6144 0.52 -1.7 164,095 - Atu6144 0.53 +0.7 164,097 + Atu6144 0.53 -2.2 164,097 + Atu6144 0.53 -2.0 164,097 + Atu6144 0.53 -2.1 164,105 - Atu6144 0.54 -2.0 164,105 - Atu6144 0.54 -0.9 164,105 - Atu6144 0.54 -2.1 164,105 - Atu6144 0.54 -1.5 164,180 + Atu6144 0.64 -1.3 164,271 + Atu6144 0.75 -1.0 164,296 + Atu6144 0.78 -1.0 164,353 + Atu6144 0.85 -1.3 164,361 - Atu6144 0.86 -3.1 164,445 + -0.8 164,447 + +0.8 164,469 + -1.6 164,477 - +0.0 164,477 - -0.8 164,550 - Atu6145 0.11 -1.0 164,550 - Atu6145 0.11 -1.7 164,569 + Atu6145 0.13 -0.5 164,576 - Atu6145 0.14 -0.7 164,596 - Atu6145 0.16 -0.5 164,596 - Atu6145 0.16 -2.1 164,725 + Atu6145 0.32 -1.4 164,775 + Atu6145 0.38 +0.1 164,783 - Atu6145 0.39 -1.3 164,783 - Atu6145 0.39 -0.8 164,788 - Atu6145 0.40 +0.7 164,891 + Atu6145 0.52 -1.5 164,899 - Atu6145 0.53 -3.1 164,906 + Atu6145 0.54 -0.3 164,932 - Atu6145 0.57 -1.0 164,986 + Atu6145 0.64 -0.7 164,994 - Atu6145 0.65 -1.0 165,056 + Atu6145 0.72 -0.6 165,062 - Atu6145 0.73 -1.0 165,085 - Atu6145 0.76 -0.4 165,155 + Atu6145 0.84 -0.6 165,159 - Atu6145 0.85 -1.3 165,163 - Atu6145 0.85 -0.6 165,179 + Atu6145 0.87 -0.2 165,179 + Atu6145 0.87 -1.3 165,183 - Atu6145 0.88 -2.9 165,187 - Atu6145 0.88 -0.9 165,221 - -1.1 165,242 + -0.2 165,291 + +0.5 165,299 - +0.6 165,299 - -0.1 165,322 + -0.1 165,330 - Atu6146 0.11 +0.3 165,332 + Atu6146 0.11 +0.1 165,340 - Atu6146 0.13 +0.3 165,366 + Atu6146 0.19 +0.4 165,423 + Atu6146 0.31 -0.1 165,429 + Atu6146 0.32 +0.4 165,439 - Atu6146 0.34 +0.4 165,449 - Atu6146 0.37 -1.1 165,449 - Atu6146 0.37 +0.3
Or see this region's nucleotide sequence